DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.034e-28
Identity = 68/151 (45.03%), Postives = 98/151 (64.90%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDA-HSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 472
            DLF+ A + +P I+FIDE+DA+G  R +A HS  ERE  +T+ +LL ++DGFD+   + ++ ATNR + LDPALLRPGR DR++    PD+K R  I +IH   + LA +V+L+        +SGAD+  +  EA LLA+R  R +V  TD
Sbjct:  224 DLFKQAREKAPGIIFIDELDAIGKSRLNAIHSNDERE--QTLNQLLVEMDGFDNTTGLILLAATNRPDVLDPALLRPGRFDRQVCVDRPDLKGREAILRIHAQNVKLAPEVDLKAVARITGGYSGADLANVVNEAALLAVRSGRAQVIETD 372          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SAV_SULAC (Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.470e-28
Identity = 68/147 (46.26%), Postives = 96/147 (65.31%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            E E+   ++F+ A++ +PSI+FIDEIDA+  KR D    GE E +R + +LL  +DG   RG V VI ATNR +++DPAL RPGR DR+IE   PD K R+ I Q+HT  M + DDV+L++       ++GAD+ A+  EA + ALR
Sbjct:  289 ESEQRIREIFKEAEENAPSIIFIDEIDAIAPKREDVT--GEVE-KRVVAQLLTLMDGIKGRGRVIVIGATNRPDAIDPALRRPGRFDREIEIRPPDTKGRKDILQVHTRNMPITDDVDLDKLAEMTYGYTGADLAALAKEAAIYALR 432          

HSP 2 Score: 108.227 bits (269), Expect = 4.390e-23
Identity = 59/147 (40.14%), Postives = 89/147 (60.54%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            E E+   ++FR A   +P+++F DEID++   R  +   G  E  R + +LL ++DG      V +I ATNR + LDPALLRPGR DR I  P PD   R  I ++HT  + LA+DV+LE+     + ++GAD++A+  EA + A+R
Sbjct:  564 ESEKAIREIFRKARQAAPTVIFFDEIDSIAPIRGLSTDSGVTE--RIVNQLLAEMDGIVPLNKVVIIAATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLEDIAEKAEGYTGADLEALVREATINAMR 708          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.470e-28
Identity = 64/147 (43.54%), Postives = 90/147 (61.22%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 463
            DLF  A   +P I+FIDEIDAVG +R     GG  E ++T+ +LL ++DGF +   + +I ATNR + LDPALLRPGR DR+I+   PD+  R  + ++H     L DDVNL+        FSGAD++ +  EA L+A R    K++
Sbjct:  249 DLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGFSANEGIIIIAATNRADILDPALLRPGRFDRQIQVNRPDVNGREEVLKVHARNKPLNDDVNLKTIATRTPGFSGADLENLLNEAALVAARHDHTKIS 395          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.470e-28
Identity = 64/147 (43.54%), Postives = 91/147 (61.90%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 463
            DLF+ A + +P IVF+DEIDAVG +R     GG  E ++T+ +LL ++DGF+    V V+ ATNR + LD ALLRPGR DR++   +PD+K R  I ++H       +DV+LE   M    FSGAD+  +  EA +LA R  R  ++
Sbjct:  310 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRARTSIS 456          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH_MYCPN (Cell division protease ftsH homolog OS=Mycoplasma pneumoniae GN=ftsH PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28
Identity = 65/150 (43.33%), Postives = 91/150 (60.67%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 472
            DLF  A   +P I+FIDEID+VG+KR          +++T+ +LL ++DGF SR  V V+ ATNR++ LD ALLRPGR DR I+  LPDIK R  I Q+H     L+  ++L +       FSGA ++ +  EA LLA+R+ R  +   D
Sbjct:  311 DLFNKAKKAAPCIIFIDEIDSVGSKRGRVELSSYSVVEQTLNQLLAEMDGFTSRTGVVVMAATNRLDVLDDALLRPGRFDRHIQINLPDIKEREGILQVHAKNKNLSSKISLLDVAKRTPGFSGAQLENVINEATLLAVRDNRTTINMND 460          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28
Identity = 70/150 (46.67%), Postives = 90/150 (60.00%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 472
            DLF  A   SP IVFIDEIDAVG  R     GG  E ++T+ ++L ++DGF     V VI ATNR E LD ALLRPGR DR++   LPDI+ R  I ++H+    L  DV+L    M    FSGAD+  +  EA +LA R  + K+T T+
Sbjct:  307 DLFNKAKANSPCIVFIDEIDAVGRMRGTGIGGGNDEREQTLNQILTEMDGFAGNTGVIVIAATNRPEILDSALLRPGRFDRQVSVGLPDIRGREEILKVHSRSKKLDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKDKITLTE 456          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH_LACLA (Cell division protease ftsH homolog OS=Lactococcus lactis subsp. lactis GN=ftsH PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.919e-28
Identity = 66/151 (43.71%), Postives = 92/151 (60.93%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 472
            DLF  A   +PSI+FIDEIDAVG +R     GG  E ++T+ +LL ++DGF   G+ V VI ATNR + LDPALLRPGR DRK+    PD+K R  + ++H     LA DV+L         + GAD++ +  EA L+A R+ + ++   D
Sbjct:  276 DLFENAKKTAPSIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFQDDGNSVIVIAATNRSDVLDPALLRPGRFDRKVLVGAPDVKGREAVLKVHAKNKPLASDVDLHNVATQTPGYVGADLENVLNEAALVAARQNKKEINAAD 426          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.919e-28
Identity = 63/147 (42.86%), Postives = 90/147 (61.22%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 463
            DLF+ A + SP IVFIDEIDAVG +R     GG  E ++T+ +LL ++DGF+    + +I ATNR++ LD ALLRPGR DR++   +PD+K R  I  +H     L   ++LE        FSGAD+  +  EA +L  R R+ ++T
Sbjct:  256 DLFKKAKENSPCIVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRVDVLDAALLRPGRFDRQVTVDVPDVKGRLEILNVHARNKKLDLSISLELIAKRTPGFSGADLANLLNEAAILTARRRKKQIT 402          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH_AQUAE (Cell division protease ftsH homolog OS=Aquifex aeolicus GN=ftsH PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.919e-28
Identity = 68/148 (45.95%), Postives = 93/148 (62.84%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAH-SGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 463
            DLF  A   +P I+FIDEIDAVG  R      GG  E ++T+ +LL ++DGFD+   + VI ATNR + LDPALLRPGR DR+I  P PD++ R  I ++H     LA DV+LE        F+GAD++ +  EA LLA R+ + ++T
Sbjct:  238 DLFETAKKHAPCIIFIDEIDAVGRARGAIPVGGGHDEREQTLNQLLVEMDGFDTSDGIIVIAATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILKVHARNKKLAKDVDLEFVARATPGFTGADLENLLNEAALLAARKGKEEIT 385          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.919e-28
Identity = 64/147 (43.54%), Postives = 91/147 (61.90%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 463
            DLF+ A + +P IVF+DEIDAVG +R     GG  E ++T+ +LL ++DGF+    + VI ATNR + LD ALLRPGR DR++   +PD++ R  I ++H S      DV+LE   M    FSGAD+  +  EA +LA R  R  ++
Sbjct:  297 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDVRGRTEILKVHGSNKKFDTDVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGRTAIS 443          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
FTSH_TREPA2.034e-2845.03Cell division protease ftsH homolog OS=Treponema p... [more]
SAV_SULAC3.470e-2846.26Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE... [more]
FTSH_BACPF3.470e-2843.54Cell division protease ftsH homolog OS=Bacillus ps... [more]
FTSH2_ARATH3.470e-2843.54Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH_MYCPN4.532e-2843.33Cell division protease ftsH homolog OS=Mycoplasma ... [more]
FTSH6_ARATH4.532e-2846.67Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH_LACLA5.919e-2843.71Cell division protease ftsH homolog OS=Lactococcus... [more]
FTSH_GUITH5.919e-2842.86Cell division protease ftsH homolog OS=Guillardia ... [more]
FTSH_AQUAE5.919e-2845.95Cell division protease ftsH homolog OS=Aquifex aeo... [more]
FTSH2_ORYSJ5.919e-2843.54Cell division protease ftsH homolog 2, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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