DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.938e-27
Identity = 65/147 (44.22%), Postives = 92/147 (62.59%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 463
            DLF+ A + +P IVFIDEIDAVG +R     GG  E ++T+ +LL ++DGF     V V+ ATNRI+ LD ALLRPGR DR+I   LP+I  R  I ++H+ +  +  DV LE        FSGAD+  +  EA +L +R  ++++T
Sbjct:  254 DLFKKAKEKAPCIVFIDEIDAVGRQRGVGIGGGNDEREQTLNQLLTEMDGFSGDTGVIVVAATNRIDVLDSALLRPGRFDRQIMVSLPNINGRLAILKVHSKKKKIHKDVLLEVIARRTPGFSGADLANLLNEAAILTVRRGKVEIT 400          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.938e-27
Identity = 65/151 (43.05%), Postives = 93/151 (61.59%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            D+F  +  ++P I+FIDEIDAVG +R     GG  E ++T+ ++L ++DGFD    + +I ATNR + LDPALLRPGR DR+I   LPDI+ R +I Q+H  ++ L ++V+          FSGAD+  +  EA L A R  R  V  +DF
Sbjct:  235 DMFEHSRKVAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFDGNEGIILIAATNRPDVLDPALLRPGRFDRQIFVALPDIRGREKIIQVHMKKVPLGNNVDPMIIARGTPGFSGADLANLVNEAALFAARNNRDVVMMSDF 385          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH_STRR6 (Cell division protease ftsH homolog OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=ftsH PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27
Identity = 64/149 (42.95%), Postives = 91/149 (61.07%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 472
            LF  A   +P+I+FIDEIDAVG +R     GG  E ++T+ +LL ++DGF+    + VI ATNR + LDPALLRPGR DRK+    PD+K R  I ++H     LA+DV+L+        F GAD++ +  EA L+A R  +  +  +D
Sbjct:  271 LFEDAKKAAPAIIFIDEIDAVGRQRGVGLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRNKSIIDASD 419          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH_STRPN (Cell division protease ftsH homolog OS=Streptococcus pneumoniae GN=ftsH PE=3 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27
Identity = 64/149 (42.95%), Postives = 91/149 (61.07%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 472
            LF  A   +P+I+FIDEIDAVG +R     GG  E ++T+ +LL ++DGF+    + VI ATNR + LDPALLRPGR DRK+    PD+K R  I ++H     LA+DV+L+        F GAD++ +  EA L+A R  +  +  +D
Sbjct:  271 LFEDAKKAAPAIIFIDEIDAVGRQRGVGLGGGNDEREQTLNQLLIEMDGFEGNEGIIVIAATNRSDVLDPALLRPGRFDRKVLVGRPDVKGREAILKVHAKNKPLAEDVDLKLVAQQTPGFVGADLENVLNEAALVAARRNKSIIDASD 419          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH_MYCLE (Cell division protease ftsH homolog OS=Mycobacterium leprae GN=ftsH PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27
Identity = 64/147 (43.54%), Postives = 89/147 (60.54%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 463
            DLF  A   SP I+F+DEIDAVG +R     GG  E ++T+ +LL ++DGF  R  V +I ATNR + LDPALLRPGR DR+I    PD+  RR + ++H+    +ADD +L+         +GAD+  +  EA LL  RE  + +T
Sbjct:  246 DLFDQAKQNSPCIIFVDEIDAVGRQRGTGLGGGHDEREQTLNQLLVEMDGFGDRAGVILIAATNRPDILDPALLRPGRFDRQIPVSNPDLAGRRAVLRVHSKGKPIADDADLDGLAKRTVGMTGADLANVVNEAALLTARENGLVIT 392          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27
Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 463
            DLF+ A + +P IVF+DEIDAVG +R     GG  E ++T+ +LL ++DGF+    V V+ ATNR + LD ALLRPGR DR++   +PD+K R  I ++H+        V+LE   M    FSGAD+  +  EA +LA R  +  ++
Sbjct:  303 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAIS 449          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27
Identity = 66/153 (43.14%), Postives = 94/153 (61.44%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRGDVKVILA-TNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            DLF  A   +P IVFIDE+DA+G  R   A  GG  E ++T+ +LL ++DGF + G   ++LA TNR E+LDPALLRPGR DR++    PD+  R +I +I+  ++ L  +V L+        F+GAD+  +  EA LLA R ++  VT  DF
Sbjct:  257 DLFEQAKKQAPCIVFIDELDAIGKSRASGAFMGGNDEREQTLNQLLTEMDGFSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGRLKILEIYAKKIKLDKEVELKNIATRTPGFAGADLANLVNEAALLAARNKQDSVTEADF 409          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH1_HAEIN (Cell division protease ftsH homolog 1 OS=Haemophilus influenzae GN=ftsH-A PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 62/151 (41.06%), Postives = 91/151 (60.26%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            D+F  A   +P ++FIDEIDAVG +R     GG  E ++T+ ++L ++DGF     V VI ATNR + LDPAL RPGR DR++   LPD+K R +I ++H  ++++A DV+          +SGAD+  +  EA L A R  +  VT  +F
Sbjct:  234 DMFEQAKKNAPCLIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFSGNDGVIVIAATNRPDVLDPALTRPGRFDRQVVVGLPDVKGREQILKVHMRKVSVAQDVDAMTLARGTPGYSGADLANLVNEAALFAARVNKRTVTMLEF 384          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: CDC48_SOYBN (Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 67/149 (44.97%), Postives = 88/149 (59.06%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E E      F  A+  +PSI+FIDEID++  KR   H   ER I   + +LL  +DG  SR  V VI ATNR  S+DPAL R GR DR+I+  +PD   R  + +IHT  M L+DDV+LE        + GAD+ A+CTEA L  +RE+
Sbjct:  285 ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRI---VSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 430          

HSP 2 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 55/148 (37.16%), Postives = 84/148 (56.76%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E    ++F  A   +P ++F DE+D++ T+R  +         R + +LL ++DG  ++  V +I ATNR + +DPALLRPGR+D+ I  PLPD  +R +IF+    +  +A +V+L         FSGADI  IC  A   A+RE
Sbjct:  558 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPIAKNVDLRALARHTQGFSGADITEICQRACKYAIRE 705          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 58/147 (39.46%), Postives = 89/147 (60.54%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 463
            DLF+ A + +P ++FIDEIDAVG +R     GG  E ++T+ +LL ++DGF+    + +I ATNR + LD AL+RPGR DR++    PD   R+ I ++H     LA +V+++        FSGAD+  +  EA +L  R R+  +T
Sbjct:  255 DLFKKAKENAPCLIFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLAPEVSIDSIARRTPGFSGADLANLLNEAAILTARRRKSAIT 401          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
FTSH_CYACA2.938e-2744.22Cell division protease ftsH homolog OS=Cyanidium c... [more]
FTSH_BUCBP2.938e-2743.05Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH_STRR63.837e-2742.95Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_STRPN3.837e-2742.95Cell division protease ftsH homolog OS=Streptococc... [more]
FTSH_MYCLE3.837e-2743.54Cell division protease ftsH homolog OS=Mycobacteri... [more]
FTSH8_ARATH5.011e-2742.18Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH3_SYNY35.011e-2743.14Cell division protease ftsH homolog 3 OS=Synechocy... [more]
FTSH1_HAEIN1.458e-2641.06Cell division protease ftsH homolog 1 OS=Haemophil... [more]
CDC48_SOYBN1.458e-2644.97Cell division cycle protein 48 homolog OS=Glycine ... [more]
FTSH1_SYNY31.904e-2639.46Cell division protease ftsH homolog 1 OS=Synechocy... [more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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