DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: YMEL1_MOUSE (ATP-dependent metalloprotease YME1L1 OS=Mus musculus GN=Yme1l1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 53/147 (36.05%), Postives = 85/147 (57.82%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 463
            +LFR A   +P ++FIDE+D+VG KR +  S      ++T+ +LL ++DGF     V +I ATN  E+LD AL+RPGR D ++  P PD+K R  I + + +++     V+ E        FSGA+++ +  +A L A  + +  VT
Sbjct:  364 NLFREAKANAPCVIFIDELDSVGGKRIE--SPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDKSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVT 508          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX1_DICDI (Peroxisome biogenesis factor 1 OS=Dictyostelium discoideum GN=pex1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 48/146 (32.88%), Postives = 80/146 (54.79%), Query Frame = 2
Query:    8 EREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E+   D+F  A    P ++F DE D++  +R   +SG      R + + L QLDG +    V V+ AT+R + +DPALLRPGR+D+ +   +P+   R  I     S+M L+  ++LE+       ++GAD++A+   A L ++ E
Sbjct:  945 EQGVRDVFSRASSAKPCVLFFDEFDSIAPRRGHDNSG---VTDRVVNQFLTQLDGVEGLTGVYVLAATSRPDLIDPALLRPGRLDKSLYCNIPEFNERLDILTCLKSKMNLSPSISLEQLSTNTQYYTGADLRALMYNAQLKSIHE 1087          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 57/156 (36.54%), Postives = 83/156 (53.21%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD-------VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E E+    LF +A   SP+ +FIDEID++ ++R    S      +R   ELL Q+DG     +       V V+ ATN    +D AL R  R++++I  PLP  K R  + +I    + LADDVNL       + +SGADI  +C +A L+A+R R
Sbjct:  285 ESEKLVRLLFEMARFYSPATIFIDEIDSICSRR--GTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRR 436          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 60/161 (37.27%), Postives = 88/161 (54.66%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREI-QRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT----LADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHT 469
            + ERE  D     ++    I+  DE+DA+  KR    SGG+  +  + + +LL ++DG D   ++ VI  TNR + +D ALLRPGR++  +E  LPD   R +I +IHTSRM     L +DV++EE       FSGA+I  +   A   A   R +KV  T
Sbjct:  359 DAEREYRDR---GEESGLHIIIFDELDAICKKR--GSSGGDTGVGDQVVNQLLAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEIAGLIKSASSFAF-YRHIKVGTT 513          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_CANGA (Peroxisomal biogenesis factor 6 OS=Candida glabrata GN=PEX6 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR-RIFQIHTSRMTLADDVNLEEFVMT-KDEFSGADIKAICTEAGLLAL 439
            E E     +F+ A D  P ++F DE+D+V  KR +   SGG  +  R + +LL +LDG  S GD V +I ATNR + LD ALLRPGR D+ I   + D + ++  I +  T +  ++ D+N +E V      ++GAD  A+C++A L A+
Sbjct:  794 ESEANVRRVFQKARDAKPCVIFFDEVDSVAPKRGNQGDSGGVMD--RIVSQLLAELDGMSSDGDGVFIIGATNRPDLLDEALLRPGRFDKLIYLGIADTREKQANIMRALTRKFKVSSDINFDELVSDFPFSYTGADFYALCSDAMLKAM 941          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD-------VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E E+    LF +A   SP+ +FIDEID++ ++R    S      +R   ELL Q+DG     +       V V+ ATN    +D AL R  R++++I  PLP  K R  + +I    + LADDV+L       + +SGADI  +C +A L+A+R R
Sbjct:  285 ESEKLVRLLFEMARFYSPATIFIDEIDSICSRR--GTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRR 436          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD-------VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E E+    LF +A   SP+ +FIDEID++ ++R    S      +R   ELL Q+DG     +       V V+ ATN    +D AL R  R++++I  PLP  K R  + +I    + LADDV+L       + +SGADI  +C +A L+A+R R
Sbjct:  285 ESEKLVRLLFEMARFYSPATIFIDEIDSICSRR--GTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRR 436          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL 340
            LF+ A   +P IV+IDEIDAVG KR  + SG    E ++T+ +LL ++DG  +   V V+ +TNR + LD AL+RPGR+DR +   LP ++ RR IF+ H   + L
Sbjct:  393 LFKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTADHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKL 498          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: MEI1_CAEEL (Meiotic spindle formation protein mei-1 OS=Caenorhabditis elegans GN=mei-1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 55/143 (38.46%), Postives = 81/143 (56.64%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDG----FDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            LF +A   +PSI+FIDEID +G +R   +SG     +R   E L Q+DG    FDSR  V V+ ATN    LD AL R  R +++I  PLPDI  R+++ +        +D++N ++     + FSGAD+ ++C  A +  LR
Sbjct:  277 LFELARFYAPSIIFIDEIDTLGGQR--GNSGEHEASRRVKSEFLVQMDGSQNKFDSRR-VFVLAATNIPWELDEALRR--RFEKRIFIPLPDIDARKKLIEKSMEGTPKSDEINYDDLAARTEGFSGADVVSLCRTAAINVLR 414          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPA5L_XENTR (Spermatogenesis-associated protein 5-like protein 1 OS=Xenopus tropicalis GN=spata5l1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = 2
Query:    2 EREREREDLFRVADDLS---PSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL 439
            E E     +F  A + +   P+++FIDE+DA+  KR  ++S  E    R + +LL  +DG DS   +  + AT+R +++DPAL RPGR DR++    P  K R+ I ++  S M    DV+          + GAD+ A+C +A + A+
Sbjct:  268 ESEENLRKIFEKAREAACSGPALLFIDEVDALCPKRGHSNSAPEN---RVVAQLLTLMDGIDSDNKMVTVAATSRPDAIDPALRRPGRFDREVIIGTPTHKQRQAILEMMISNMPTDRDVDAAALADVTVGYVGADLTALCRDAAMQAV 413          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
YMEL1_MOUSE4.701e-1736.05ATP-dependent metalloprotease YME1L1 OS=Mus muscul... [more]
PEX1_DICDI4.701e-1732.88Peroxisome biogenesis factor 1 OS=Dictyostelium di... [more]
KTNA1_RAT4.701e-1736.54Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
SEC18_SCHPO6.140e-1737.27Vesicular-fusion protein sec18 OS=Schizosaccharomy... [more]
PEX6_CANGA6.140e-1738.00Peroxisomal biogenesis factor 6 OS=Candida glabrat... [more]
KTNA1_MACFA1.786e-1635.90Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN1.786e-1635.90Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
SPG7_RAT2.333e-1644.34Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
MEI1_CAEEL3.047e-1638.46Meiotic spindle formation protein mei-1 OS=Caenorh... [more]
SPA5L_XENTR3.980e-1633.56Spermatogenesis-associated protein 5-like protein ... [more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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