DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900289_ssr1 microsatellite DC900289_ssr1:1..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4351 contig Csv1_Contig4351:374..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_YEAST (Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisiae GN=PEX6 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 58/150 (38.67%), Postives = 86/150 (57.33%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR-RIFQIHTSRMTLADDVNLEEFV-MTKDEFSGADIKAICTEAGLLAL 439
            E E     +F+ A +  P ++F DEID+V  KR +   SGG  +  R + +LL +LDG  +  D V VI ATNR + LD ALLRPGR D+ +   +PD  T++  I +  T +  L +DV L E   +    ++GAD  A+C++A L A+
Sbjct:  808 ESEANVRRVFQKAREAKPCVIFFDEIDSVAPKRGNQGDSGGVMD--RIVSQLLAELDGMSTDADGVFVIGATNRPDLLDEALLRPGRFDKLLYLGIPDTDTKQLNILEALTRKFVLDNDVKLIELAKLCPFNYTGADFYALCSDAMLNAM 955          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 54/155 (34.84%), Postives = 86/155 (55.48%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD------VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E E+    LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG     +      V V+ ATN    +D AL R  R++++I  PLP  K R  + +I+   + LA+DVN+++     + +SGADI  +C +A L+A+R R
Sbjct:  280 ESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSEEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDASLMAMRRR 430          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: KTNA1_CHICK (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 56/156 (35.90%), Postives = 84/156 (53.85%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E E+    LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+ ATN    +D AL R  R++++I  PLP  K R  + +I+   + LADDV+L       + +SGADI  +C +A L+A+R R
Sbjct:  286 ESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSEEHEASRRVKAELLVQMDGVGGATENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGREELLRINLRELELADDVDLANIAEKMEGYSGADITNVCRDASLMAMRRR 437          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_DICDI (Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 55/152 (36.18%), Postives = 84/152 (55.26%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR-RIFQIHTSRMTLADDVNLEEFVMT-KDEFSGADIKAICTEAGLLALRER 448
            E E+   ++F  A    P ++F DE+D++   R + A SGG  +  R + +LL +LDG     DV +I ATNR + LD +L+RPGR+DR +   +   K  + +I Q  T +  LADDV+L + V       +GAD  A+ ++A   A  ER
Sbjct:  995 ESEKNIREIFNKARQAKPCVIFFDELDSLAPSRGNGADSGGVMD--RVVSQLLAELDGMQKSSDVFIIGATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQFKILQALTRKFNLADDVDLRKVVENCPMNLTGADFYALASDAMSNAFHER 1144          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: NSF_PONAB (Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 52/145 (35.86%), Postives = 84/145 (57.93%), Query Frame = 2
Query:   20 EDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL 439
            E+  R+  +    I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ K+E  LPD K R +I  IHT+RM     L+ DV+++E  M    FSGA+++ +   A   A+
Sbjct:  311 EEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAMETKNFSGAELEGLVRAAQSTAM 453          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SEC18_YEAST (Vesicular-fusion protein SEC18 OS=Saccharomyces cerevisiae GN=SEC18 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 55/165 (33.33%), Postives = 84/165 (50.91%), Query Frame = 2
Query:   41 DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE----------------RRMKVTHTDF 475
            ++ S  I+  DE+D+V  +R  +   G       + +LL ++DG D   ++ VI  TNR + +D ALLRPGR + ++E  LPD K R +IF I T +M     ++DDVNL E       FSGA+I+ +   A   A+ +                 ++KVT  DF
Sbjct:  339 EESSLHIIIFDELDSVFKQR-GSRGDGTGVGDNVVNQLLAKMDGVDQLNNILVIGMTNRKDLIDSALLRPGRFEVQVEIHLPDEKGRLQIFDIQTKKMRENNMMSDDVNLAELAALTKNFSGAEIEGLVKSASSFAINKTVNIGKGATKLNTKDIAKLKVTREDF 502          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: NSF_DICDI (Vesicle-fusing ATPase OS=Dictyostelium discoideum GN=nsfA PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 50/136 (36.76%), Postives = 74/136 (54.41%), Query Frame = 2
Query:   41 DDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLA 436
            DD    I+  DE+DA+   R  +  G        + +LL  +DG +S  ++ VI  TNR + +D ALLRPGR++  +E  LPD   R +IF+IHT++M     L  DVNL  +  T   +SGA+I+ +   A   A
Sbjct:  322 DDSGLHIIIFDELDAICKSR-GSRQGDSGVGDSVVNQLLAMIDGVESLNNILVIGMTNRKDMIDEALLRPGRLEVHVEISLPDEHGREQIFKIHTAKMRDQNALDKDVNLANYAHTTRNYSGAEIEGVVKSAASYA 456          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 54/156 (34.62%), Postives = 85/156 (54.49%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD-------VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E E+    LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG     D       V V+ ATN    +D AL R  R++++I  PLP  K R  + +I+   + LA+DV++ +     + +SGADI  +C +A L+A+R R
Sbjct:  280 ESEKLVRILFEMARFYAPTTIFIDEIDSMCSRR--GTSEEHEASRRVKAELLVQMDGVGGASDNEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPSAKGRVELLRINLKELELANDVDMAKIAEQSEGYSGADITNVCRDASLMAMRRR 431          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 54/157 (34.39%), Postives = 84/157 (53.50%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFD--------SRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E ER    LF +A   +PS +FIDEID++   R    SG     +R   ELL Q+DG          SR  V V+ ATN    +D AL R  R++++I  PLPD ++R+ +  I+   + +A DVN+E+     + +SG D+  +C +A +  +R +
Sbjct:  315 ESERMVRCLFDLARAYAPSTIFIDEIDSLCNSR--GGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDASMNGMRRK 467          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: NSF_ARATH (Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.158e-15
Identity = 60/183 (32.79%), Postives = 89/183 (48.63%), Query Frame = 2
Query:    2 EREREREDLF-------RVADDLSP-SIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT----LADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL-------------RERRMKVTHTDF 475
            E E+   DLF       R   D S   ++  DEIDA+   R     G        + +LL ++DG ++  +V +I  TNR + LD ALLRPGR++ ++E  LPD   R +I QIHT++M     L  D+NL+E       +SGA+++ +   A   AL              E  +K+T  DF
Sbjct:  294 ETEKNVRDLFADAEQDQRTLGDASELHVIIFDEIDAICKSRGSTRDGTGVH-DSIVNQLLTKIDGVEALNNVLLIGMTNRKDLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNKMKENSFLGTDINLQELAARTKNYSGAELEGVVKSATSYALNRQLSMDDLTKPVEEENIKITMEDF 475          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
PEX6_YEAST3.980e-1638.67Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisia... [more]
KTNA1_DANRE3.980e-1634.84Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
KTNA1_CHICK3.980e-1635.90Katanin p60 ATPase-containing subunit A1 OS=Gallus... [more]
PEX6_DICDI5.198e-1636.18Peroxisomal biogenesis factor 6 OS=Dictyostelium d... [more]
NSF_PONAB6.788e-1635.86Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 ... [more]
SEC18_YEAST8.866e-1633.33Vesicular-fusion protein SEC18 OS=Saccharomyces ce... [more]
NSF_DICDI8.866e-1636.76Vesicle-fusing ATPase OS=Dictyostelium discoideum ... [more]
KTNA1_SALSA8.866e-1634.62Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]
KTNA1_ARATH8.866e-1634.39Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
NSF_ARATH1.158e-1532.79Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=N... [more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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