DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900289_ssr1 microsatellite DC900289_ssr1:1..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4351 contig Csv1_Contig4351:374..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_GLOLA (Peroxisomal biogenesis factor 6 OS=Glomerella lagenarium GN=PEX6 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 59/160 (36.88%), Postives = 87/160 (54.37%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGF----DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR-RIFQIHTSRMTLADDVNLEEFVMTKD-EFSGADIKAICTEAGLLALRERRMKV 460
            E E     +F+ A D  P +VF DE+D+V  KR +   SGG  +  R + +LL +LDG     D+ G V VI ATNR + LDPALLRPGR D+ +   + D   ++ +I +  T + TL   V+L          ++GAD  A+C++A L A+  +   V
Sbjct: 1070 ESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMD--RIVSQLLAELDGMSGGDDTSGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQLKILEALTRKFTLHPSVSLHSVAQQLPFTYTGADFYALCSDAMLKAVTRQAASV 1227          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: YME1_SCHMA (Protein YME1 homolog OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 48/137 (35.04%), Postives = 77/137 (56.20%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLA 436
            LF  A   SP +VFIDEID+VG  R    S       +T+ +LL ++DGF S+  + V+ ATN+ E LD ALLRPGR D +I    P  + R  +  ++  ++    ++++E+       ++GADI+ +  +A + A
Sbjct:  250 LFTTAKQNSPCLVFIDEIDSVGGNR--TFSPHHPFANQTINQLLAEMDGFQSKEGIIVLGATNQAEVLDKALLRPGRFDVQIHVSPPTYEGRIALLNLYLKKVKTGSNIDIEKLAHGTVGYTGADIQNLVNQAAIAA 384          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS2_METJA (Putative 26S protease regulatory subunit homolog MJ1494 OS=Methanocaldococcus jannaschii GN=MJ1494 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 51/129 (39.53%), Postives = 72/129 (55.81%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKR-YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIK 406
            +L++ A + +P IVFIDE+DA+G  R Y +  G   E+      LL +LDG      V  I ATN    LDPA+    R + +IEF LP+ + R +I +++  +M L    NL+EFV     FSG DIK
Sbjct:  204 ELYQRASESAPCIVFIDELDAIGLSREYQSLRGDVSEVVNA---LLTELDGIKENEGVVTIAATNNPAMLDPAIR--SRFEEEIEFKLPNDEERLKIMELYAKKMPLPVKANLKEFVEKTKGFSGRDIK 327          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_ASHGO (Peroxisomal biogenesis factor 6 OS=Ashbya gossypii GN=PEX6 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 56/150 (37.33%), Postives = 87/150 (58.00%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR-RIFQIHTSRMTLADDVNLEEFVMT-KDEFSGADIKAICTEAGLLAL 439
            E E     +F+ A D  P ++F DE+D+V  KR +   SGG  +  R + +LL +LDG  + GD + VI ATNR + LD ALLRPGR D+ +   + D   ++  I +  T + TL  DV+L++   +    ++GAD  A+C++A L A+
Sbjct:  799 ESEANVRRVFQRARDAKPCVIFFDELDSVAPKRGNQGDSGGVMD--RIVSQLLAELDGLSTGGDGLFVIGATNRPDLLDEALLRPGRFDKLLYLGISDTNEKQANILRALTRKFTLDPDVSLDDLAASCPFTYTGADFYALCSDAMLNAM 946          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: NSF_RAT (Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 51/145 (35.17%), Postives = 84/145 (57.93%), Query Frame = 2
Query:   20 EDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL 439
            E+  R+  +    I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ K+E  LPD K R +I  IHT+RM     L+ DV+++E  +    FSGA+++ +   A   A+
Sbjct:  311 EEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAM 453          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: NSF_MOUSE (Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 51/145 (35.17%), Postives = 84/145 (57.93%), Query Frame = 2
Query:   20 EDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL 439
            E+  R+  +    I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ K+E  LPD K R +I  IHT+RM     L+ DV+++E  +    FSGA+++ +   A   A+
Sbjct:  311 EEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAM 453          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: NSF_HUMAN (Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 51/145 (35.17%), Postives = 84/145 (57.93%), Query Frame = 2
Query:   20 EDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL 439
            E+  R+  +    I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ K+E  LPD K R +I  IHT+RM     L+ DV+++E  +    FSGA+++ +   A   A+
Sbjct:  311 EEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAM 453          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: NSF_CRIGR (Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 51/145 (35.17%), Postives = 84/145 (57.93%), Query Frame = 2
Query:   20 EDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL 439
            E+  R+  +    I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ K+E  LPD K R +I  IHT+RM     L+ DV+++E  +    FSGA+++ +   A   A+
Sbjct:  311 EEQRRLGANSGLHIIIFDEIDAICKQR--GSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAAQSTAM 453          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: YR476_MIMIV (Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 56/157 (35.67%), Postives = 89/157 (56.69%), Query Frame = 2
Query:   20 EDLFRVADDLSPS-IVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLAL-RERRMKVTHTD 472
            +D ++   D SP  +V IDEIDA+   R  + S G       + + L ++DG +   ++  I  TNR+E LDPA +R GR    I+  LPD + R +IFQIHT ++     L+DDV++ +  +  +EFSGADI+ +   A + +L R  ++ V + D
Sbjct:  662 KDAWKKHGDKSPVYMVVIDEIDAMLPSR--SGSDGNPVRDSVVNQFLAEMDGLEVFNNLICIGITNRLELLDPATIRSGRFGIHIKIDLPDQEGRVKIFQIHTKKLQELNRLSDDVDISKLAVITEEFSGADIEGMVELASVYSLERLNKLDVINDD 816          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: CD48C_ARATH (Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 55/156 (35.26%), Postives = 83/156 (53.21%), Query Frame = 2
Query:    8 EREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQ-RTMLELLNQLDGFDSRGD----------VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            E    +LF  A   +PSIVFIDEIDA+G+KR +     +RE++ R + +LL  +DG  ++GD          V VI ATNR ++LDPAL R GR + +I    PD   R  I  +   ++ L    + +        F GAD++++   AG  A++
Sbjct:  312 EENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQ----QREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIARLTPGFVGADLESVAYLAGRKAIK 463          

HSP 2 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 51/149 (34.23%), Postives = 77/149 (51.68%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDE-FSGADIKAICTEAGLLALRE 445
            E E     LF+ A   +P ++F DE+DA+ T R      G   ++R + + L +LDG + R +V VI ATNR + +DPA LRPGR    +  PLP+   R  I +    +  +   V+L+       E FSGAD+  +  +A   A+ E
Sbjct:  605 ESELAIRTLFQRARTCAPCVIFFDEVDALTTSR---GKEGAWVVERLLNQFLVELDGGERR-NVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNNCEGFSGADLAHLVQKATFQAVEE 749          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
PEX6_GLOLA1.512e-1536.88Peroxisomal biogenesis factor 6 OS=Glomerella lage... [more]
YME1_SCHMA1.975e-1535.04Protein YME1 homolog OS=Schistosoma mansoni PE=2 S... [more]
PRS2_METJA1.975e-1539.53Putative 26S protease regulatory subunit homolog M... [more]
PEX6_ASHGO1.975e-1537.33Peroxisomal biogenesis factor 6 OS=Ashbya gossypii... [more]
NSF_RAT1.975e-1535.17Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf ... [more]
NSF_MOUSE1.975e-1535.17Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 ... [more]
NSF_HUMAN1.975e-1535.17Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 ... [more]
NSF_CRIGR1.975e-1535.17Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF... [more]
YR476_MIMIV3.369e-1535.67Putative AAA family ATPase R476 OS=Acanthamoeba po... [more]
CD48C_ARATH3.369e-1535.26Cell division control protein 48 homolog C OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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