DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: YCF2_MESVI (Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 50/163 (30.67%), Postives = 82/163 (50.31%), Query Frame = 2
Query:   20 EDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGE------------------REIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH-TSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERR 451
            +DLF+   ++SP I++IDEID++  +R +A+   E                  +     +++ L  +DG+  R D+ +I ATNRIE+LD A++RPGR DR+I F  P  + R+ I +I   +   L DD             +G D++ +     LL+  E R
Sbjct:  427 DDLFKQIQNISPCILYIDEIDSIAERREEANKQLEQLKTIGDSIEGSNINIDQKPSDTVLMQFLIYMDGYKKRNDLIIIGATNRIETLDDAIMRPGRFDRQIVFSPPFFEERKDILRIFLRNTKALVDDTTKTMMAERSIGLNGCDLRLLADNILLLSALESR 589          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: KATL1_RAT (Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 55/156 (35.26%), Postives = 83/156 (53.21%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E E+    LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+ ATN    +D AL R  R++++I  PLP  K R  + +I    + L  D++LE+     + +SGADI  IC +A L+A+R R
Sbjct:  282 ESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYSGADITNICRDASLMAMRRR 433          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: KATL1_MOUSE (Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 56/156 (35.90%), Postives = 83/156 (53.21%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E E+    LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+ ATN    +D AL R  R++++I  PLP  K R  + +I    + L  DV+LE+     + +SGADI  IC +A L+A+R R
Sbjct:  282 ESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKISLREVELDPDVHLEDIADKTEGYSGADITNICRDASLMAMRRR 433          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_KLULA (Peroxisomal biogenesis factor 6 OS=Kluyveromyces lactis GN=PEX6 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 56/150 (37.33%), Postives = 84/150 (56.00%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFPLPDI-KTRRRIFQIHTSRMTLADDVNLEEFV-MTKDEFSGADIKAICTEAGLLAL 439
            E E     +F+ A D  P ++F DE+D+V  KR +   SGG  +  R + +LL +LDG  S GD V VI ATNR + LD ALLRPGR D+ +   + D  K +  I +  T + TL   +++ +        ++GAD  A+C++A L A+
Sbjct:  778 ESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGGVMD--RIVSQLLAELDGMSSGGDGVFVIGATNRPDLLDEALLRPGRFDKMLYLGISDTDKKQANIIKALTRKFTLESGIDILDIAKKCPFNYTGADFYALCSDALLNAM 925          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX1_SCHPO (Peroxisomal ATPase pex1 OS=Schizosaccharomyces pombe GN=pex1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 47/152 (30.92%), Postives = 83/152 (54.61%), Query Frame = 2
Query:    8 EREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVT 463
            E+   DLF  A    P ++F DE D+V  +R    +G      R + ++L Q+DG +S   V ++ AT R + +DPALLRPGR+D+ I   LP+ + R  + Q   +R  + +   L++     D ++ AD+ ++  +A L+A+ +   +V+
Sbjct:  685 EQGVRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTG---VTDRVVNQILTQMDGAESLDGVYIVAATTRPDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYADLSSLLYDAHLIAVHKLLKRVS 833          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 54/156 (34.62%), Postives = 83/156 (53.21%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E E+    LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+ ATN    +D AL R  R++++I  PLP  K R  + +I+   + L  D+ LE+     + +SGADI  +C +A L+A+R R
Sbjct:  284 ESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRR 435          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 54/156 (34.62%), Postives = 83/156 (53.21%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E E+    LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+ ATN    +D AL R  R++++I  PLP  K R  + +I+   + L  D+ LE+     + +SGADI  +C +A L+A+R R
Sbjct:  284 ESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRR 435          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 54/156 (34.62%), Postives = 83/156 (53.21%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E E+    LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+ ATN    +D AL R  R++++I  PLP  K R  + +I+   + L  D+ LE+     + +SGADI  +C +A L+A+R R
Sbjct:  284 ESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRR 435          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_YARLI (Peroxisomal biogenesis factor 6 OS=Yarrowia lipolytica GN=PEX6 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 57/151 (37.75%), Postives = 85/151 (56.29%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRGD--VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRR-IFQIHTSRMTLADDVNLEEF-VMTKDEFSGADIKAICTEAGLLAL 439
            E E     +F+ A D  P +VF DE+D+V  +R +   SGG  +  R + +LL +LDG  + G   V V+ ATNR + LD ALLRPGR D+ +   + D   +++ I +  T +  LA DV+LE         F+GAD  A+C++A L A+
Sbjct:  795 ESEANVRRVFQKARDAKPCVVFFDELDSVAPQRGNQGDSGGVMD--RIVSQLLAELDGMSTAGGEGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTHEKQQTIMEALTRKFRLAADVSLEAISKRCPFTFTGADFYALCSDAMLNAM 943          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_DEBHA (Peroxisomal biogenesis factor 6 OS=Debaryomyces hansenii GN=PEX6 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 55/152 (36.18%), Postives = 85/152 (55.92%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGG--EREIQRTMLELLNQLDGFDSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR-RIFQIHTSRMTLADDVNLEEFV-MTKDEFSGADIKAICTEAGLLAL 439
            E E     +F+ A D  P ++F DE+D+V  KR +   SGG  +R + + + EL     G +  GD V V+ ATNR + LD ALLRPGR D+ +   + D   ++ +I +  T +  LAD+V+L E        F+GAD  A+C+++ L A+
Sbjct:  915 ESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGGVMDRIVSQLLAELDGMSGGAEGGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTDEKQSKILEALTRKFKLADNVDLYEIAKRCSFTFTGADFYALCSDSMLNAM 1066          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
YCF2_MESVI5.747e-1530.67Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=... [more]
KATL1_RAT5.747e-1535.26Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_MOUSE5.747e-1535.90Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
PEX6_KLULA7.505e-1537.33Peroxisomal biogenesis factor 6 OS=Kluyveromyces l... [more]
PEX1_SCHPO7.505e-1530.92Peroxisomal ATPase pex1 OS=Schizosaccharomyces pom... [more]
KATL1_PAPAN9.802e-1534.62Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_OTOGA9.802e-1534.62Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_HUMAN9.802e-1534.62Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
PEX6_YARLI1.280e-1437.75Peroxisomal biogenesis factor 6 OS=Yarrowia lipoly... [more]
PEX6_DEBHA1.280e-1436.18Peroxisomal biogenesis factor 6 OS=Debaryomyces ha... [more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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