DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900289_ssr1 microsatellite DC900289_ssr1:1..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4351 contig Csv1_Contig4351:374..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 54/156 (34.62%), Postives = 83/156 (53.21%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E E+    LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+ ATN    +D AL R  R++++I  PLP  K R  + +I+   + L  D+ LE+     + +SGADI  +C +A L+A+R R
Sbjct:  284 ESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRTDLLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRR 435          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 54/156 (34.62%), Postives = 82/156 (52.56%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E E+    LF +A   +P+ +FIDEID++ ++R    S      +R   ELL Q+DG        D    V V+ ATN    +D AL R  R++++I  PLP  K R  + +I    + L  D+ LE+     + +SGADI  +C +A L+A+R R
Sbjct:  284 ESEKLVRLLFEMARFYAPTTIFIDEIDSICSRR--GTSDEHEASRRVKSELLVQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKISLREVELDPDIRLEDIAEKIEGYSGADITNVCRDASLMAMRRR 435          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_PENCH (Peroxisomal biogenesis factor 6 OS=Penicillium chrysogenum GN=pex6 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 59/163 (36.20%), Postives = 90/163 (55.21%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGF----DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDI-KTRRRIFQIHTSRMTLADDVNL----EEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 460
            E E     +F+ A D  P +VF DE+D+V  KR +   SGG  +  R + +LL +LDG     ++ G V VI ATNR + LD ALLRPGR D+ +   + D  + +  I +  T +  L  DV+L    E+  +T   ++GAD+ A+C++A L A+  +   V
Sbjct: 1106 ESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMD--RIVSQLLAELDGMNGGEENSGGVFVIGATNRPDLLDTALLRPGRFDKMLYLGVSDTHRKQATILEALTRKFALHPDVSLDRVAEQLPLT---YTGADLYALCSDAMLKAITRKATAV 1263          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: KATL1_DANRE (Katanin p60 ATPase-containing subunit A-like 1 OS=Danio rerio GN=katnal1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 54/156 (34.62%), Postives = 83/156 (53.21%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 448
            E E+    LF +A   +P+ +FIDEID++  +R    S      +R   ELL Q+DG        D    V V+ ATN    +D AL R  R++++I  PLP  K R  + +I+   + +A DV+L  F    + +SGADI  +C +A ++A+R R
Sbjct:  282 ESEKLVRLLFEMARFYAPTTIFIDEIDSICGRR--GTSDEHEASRRVKSELLVQMDGVGGAQESEDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVDVASDVDLTVFAEKIEGYSGADITNVCRDASMMAMRRR 433          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_MOUSE (Peroxisome assembly factor 2 OS=Mus musculus GN=Pex6 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 53/152 (34.87%), Postives = 83/152 (54.61%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKR-YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEF-PLPDIKTRRRIFQIHTSRMTLADDVNLEEFV-MTKDEFSGADIKAICTEAGLLALRER 448
            + E    ++F  A   +P I+F DE+D++   R     SGG  +  R + +LL +LDG  S  DV VI ATNR + LDPALLRPGR D+ +      D  ++ R+    T +  L   V+L   +     + +GAD+ ++C++A + AL+ R
Sbjct:  781 QSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMD--RVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQLRVLSAITRKFKLEASVSLANVLDCCPPQLTGADLYSLCSDAMMTALKRR 930          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_RAT (Peroxisome assembly factor 2 OS=Rattus norvegicus GN=Pex6 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 53/152 (34.87%), Postives = 83/152 (54.61%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKR-YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEF-PLPDIKTRRRIFQIHTSRMTLADDVNLEEFV-MTKDEFSGADIKAICTEAGLLALRER 448
            + E    ++F  A   +P I+F DE+D++   R     SGG  +  R + +LL +LDG  S  DV VI ATNR + LDPALLRPGR D+ +      D  ++ R+    T +  L   V+L   +     + +GAD+ ++C++A + AL+ R
Sbjct:  778 QSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMD--RVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGASEDRASQLRVLSAITRKFKLEASVSLMNVLDCCPPQLTGADLYSLCSDAMMTALKRR 927          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_HUMAN (Peroxisome assembly factor 2 OS=Homo sapiens GN=PEX6 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 53/152 (34.87%), Postives = 82/152 (53.95%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKR-YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL-PDIKTRRRIFQIHTSRMTLADDVNLEEFV-MTKDEFSGADIKAICTEAGLLALRER 448
            + E    ++F  A   +P I+F DE+D++   R     SGG  +  R + +LL +LDG  S  DV VI ATNR + LDPALLRPGR D+ +      D  ++ R+    T +  L   V+L   +     + +GAD+ ++C++A   AL+ R
Sbjct:  780 QSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMD--RVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVSLVNVLDCCPPQLTGADLYSLCSDAMTAALKRR 929          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_NEUCR (Peroxisomal biogenesis factor 6 OS=Neurospora crassa GN=pex-6 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 57/153 (37.25%), Postives = 82/153 (53.59%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSR----GDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR-RIFQIHTSRMTLADDVNLEEFV-MTKDEFSGADIKAICTEAGLLAL 439
            E E     +F+ A D  P +VF DE+D+V  KR +   SGG  +  R + +LL +LDG        G V VI ATNR + LDPALLRPGR D+ +   + D   ++  I +  T + TL   V+L          ++GAD  A+C++A L A+
Sbjct: 1067 ESEANVRRVFQRARDARPCVVFFDELDSVAPKRGNQGDSGGVMD--RIVSQLLAELDGMSGGEGGGGGVFVIGATNRPDLLDPALLRPGRFDKMLYLGVSDTHDKQVTIMEALTRKFTLHPTVSLRSVAERLPFTYTGADFYALCSDAMLKAV 1217          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: NSF1_DROME (Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 50/144 (34.72%), Postives = 80/144 (55.56%), Query Frame = 2
Query:    8 EREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEA 424
            E E E+  R+  +    I+  DEIDA+  +R      G   +  T++ +LL ++DG D   ++ VI  TNR + +D ALLRPGR++ ++E  LP+ + R +I  IHT RM     + DDV+ +E       FSGA+++ +   A
Sbjct:  308 EAEEEEK-RLGPNSGLHIIIFDEIDAICKQRGSV--AGNSGVHDTVVNQLLTKIDGVDQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMREFNKINDDVDNKEIAALTKNFSGAELEGLVRAA 448          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FIGL1_HUMAN (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 49/150 (32.67%), Postives = 81/150 (54.00%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRI-FQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            E E+    LF VA    P+++FIDEID++ ++R D      R I+    E L QLDG  +  + ++++  ATNR + +D A  R  R+ +++  PLP+   R++I   + +       +  +E+ V   D FSGAD+  +C EA L  +R
Sbjct:  477 EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR 621          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
KATL1_SORAR1.672e-1434.62Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_RABIT1.672e-1434.62Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
PEX6_PENCH2.184e-1436.20Peroxisomal biogenesis factor 6 OS=Penicillium chr... [more]
KATL1_DANRE2.184e-1434.62Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
PEX6_MOUSE2.852e-1434.87Peroxisome assembly factor 2 OS=Mus musculus GN=Pe... [more]
PEX6_RAT3.725e-1434.87Peroxisome assembly factor 2 OS=Rattus norvegicus ... [more]
PEX6_HUMAN6.354e-1434.87Peroxisome assembly factor 2 OS=Homo sapiens GN=PE... [more]
PEX6_NEUCR1.084e-1337.25Peroxisomal biogenesis factor 6 OS=Neurospora cras... [more]
NSF1_DROME1.084e-1334.72Vesicle-fusing ATPase 1 OS=Drosophila melanogaster... [more]
FIGL1_HUMAN1.415e-1332.67Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 ... [more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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