DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900289_ssr1 microsatellite DC900289_ssr1:1..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4351 contig Csv1_Contig4351:374..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 56/164 (34.15%), Postives = 87/164 (53.05%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGD--VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV---NLEEFVMTKDEFSGADIKAICTEAGLLALRE-RRMKVTHTD 472
            + E+    LF++A +  PSI+FIDEID++  +R    S  + E+ R M  E L Q DG  S  D  + VI ATNR   LD A+LR  R  ++I   LPD + R+ +      +  + D +   ++         FS +D+ A+C EA ++ +RE  R K++ TD
Sbjct:  315 DSEKTIRGLFQIARNAQPSIIFIDEIDSILCER----SEKDAEVSRRMKTEFLVQFDGATSSADDRILVIGATNRPHELDDAVLR--RFPKRIMLNLPDEEARKELITKTLKKHNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVPIREIDRSKLSMTD 472          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS2_METTH (Putative 26S protease regulatory subunit homolog MTH_1011 OS=Methanobacterium thermoautotrophicum GN=MTH_1011 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 47/133 (35.34%), Postives = 73/133 (54.89%), Query Frame = 2
Query:   11 REREDLFRVADDLSPSIVFIDEIDAVGT-KRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIK 406
            R+  +L+ +A   +PS++FIDE+DA+G  +RY +  G   E+      LL ++DG +    V  I ATN  E LD A+    R + +IEF LPD + R+ + + +   M L  D  +++ V    E SG DIK
Sbjct:  203 RQIHELYELASKTAPSVIFIDEMDAIGLDRRYQSLRGDVSEVVNA---LLTEMDGINQNWGVVTIGATNNPELLDKAIR--SRFEEEIEFKLPDDEERKLMLEKYIETMPLKVDFPVDKLVKLTREMSGRDIK 330          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: NSF_CAEEL (Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 45/127 (35.43%), Postives = 75/127 (59.06%), Query Frame = 2
Query:   59 IVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEA 424
            I+  DEIDA+  +R      G   +  T++ +LL+++DG +   ++ VI  TNR + +D ALLRPGR++ ++E  LPD   R +I +IHT+RM     +  +V+LE+       FSGA+++ +   A
Sbjct:  401 IIIFDEIDAICKQR--GSMAGSSSVHDTVVNQLLSKMDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDETGRLQILKIHTARMREYNKMDPNVDLEDISKRTKNFSGAELEGLVRAA 525          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_SCHPO (Peroxisomal ATPase pex6 OS=Schizosaccharomyces pombe GN=pex6 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 48/157 (30.57%), Postives = 86/157 (54.78%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF--DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPL-PDIKTRRRIFQIHTSRMTLADDVNLEEFVMT-KDEFSGADIKAICTEAGLLALRERRMKV 460
            E E    ++F  A + SP ++F DE+D++   R ++   G   + R + +LL +LD    D+   V VI ATNR + LDP+LLRPGR D+ +   +    +++  + +  T    L + ++L E        F+GAD+ A+C++A L A++ +  ++
Sbjct:  731 ESEANVRNVFEKARNSSPCVIFFDELDSIAPHRGNSSDSGN-VMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPNFTGADMYALCSDAVLSAIKRKTNEI 886          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSR--GD-VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR-RIFQIHTSRMTLADDVNLEEFVMT-KDEFSGADIKAICTEAGLLAL 439
            E E     +F+ A D  P ++F DE+D+V  KR +   SGG  +  R + +LL +LDG      GD V V+ ATNR + LD ALLRPGR D+ +   + D   ++ +I Q  T +  L   V+L     T    ++GAD  A+C++A L A+
Sbjct:  889 ESEANVRRVFQKARDAKPCVIFFDELDSVAPKRGNQGDSGGVMD--RIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTHEKQAKIIQALTRKFQLDPSVDLGRIAETCPFTYTGADFYALCSDAMLNAM 1038          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEBR (Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 53/152 (34.87%), Postives = 86/152 (56.58%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ--IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+    LF VA    PS++FIDEID++ + R ++     R I+    E L QLDG ++  D ++++  ATNR + LD A  R  R  +++   LP+  +R +I +  +  +R  + D  NLE+     D +SGAD++ +CTEA +  +RE
Sbjct:  392 EGEKLVRALFSVARLKLPSVIFIDEIDSLLSARSESEHESSRRIKT---EFLVQLDGVNTAPDERLLVLGATNRPQELDEAARR--RFQKRLYIALPEPDSRTQIVENLLRGTRHEITDH-NLEKIRRLTDGYSGADMRQLCTEAAMGPIRE 537          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX6_PICPA (Peroxisomal biogenesis factor 6 OS=Pichia pastoris GN=PEX6 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 52/151 (34.44%), Postives = 82/151 (54.30%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF---DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRR-RIFQIHTSRMTLADDVNLEEFVMT-KDEFSGADIKAICTEAGLLAL 439
            E E     +F+ A D  P +VF DE+D+V  KR +     E  + R + +LL +LDG    D    V V+ ATNR + LD ALLRPGR D+ +   + D   ++ +I +  + +  L   V+L++   +    F+GAD  A+C++A L A+
Sbjct:  895 ESEANVRKVFQRARDAKPCVVFFDELDSVAPKRGN-QGDSEGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGVSDTHEKQSKIMEALSRKFHLHPSVDLDKVAESCPFTFTGADFYALCSDAMLNAM 1044          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: NSF2_DROME (Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 54/176 (30.68%), Postives = 87/176 (49.43%), Query Frame = 2
Query:    8 EREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTML-ELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM----TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE---------------RRMKVTHTDF 475
            E E E+  R+  +    I+  DEIDA+   R      G   +  T++ +LL ++DG +   ++ VI  TNR + +D ALLRPGR++ ++E  LP+ + R +I  IHT RM     +A DV+  E       FSGA+++ +   A   A+                  +++VT  DF
Sbjct:  313 EAEEEEK-RLGPNSGLHIIIFDEIDAICKARGSV--AGNSGVHDTVVNQLLAKIDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEISLPNEQGRVQILNIHTKRMRDFNKIASDVDNNEIAAKTKNFSGAELEGLVRAAQSTAMNRLIKADSKVHVDPEAMEKLRVTRADF 485          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 56/164 (34.15%), Postives = 87/164 (53.05%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGD--VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDV---NLEEFVMTKDEFSGADIKAICTEAGLLALRE-RRMKVTHTD 472
            + E+    LF++A +  PSI+FIDEID++  +R    S  + E+ R M  E L Q DG  S  D  + VI ATNR   LD A+LR  R  ++I   LPD + R+ +      +  + D +   ++         FS +D+ A+C EA ++ +RE  R K++ TD
Sbjct:  345 DSEKTIRGLFQIARNGQPSIIFIDEIDSILCER----SEKDAEVSRRMKTEFLVQFDGATSSPDDRILVIGATNRPYELDDAVLR--RFPKRIMLNLPDTEARKELITNTLKKHDMMDGLSSSDIRYIASNTSGFSNSDLVALCKEAAMVPVREIHRSKLSVTD 502          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 54/148 (36.49%), Postives = 80/148 (54.05%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGD---VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTR----RRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            LF VA +L PSI+FIDE+D+V ++R    S  E E  R +  E L Q DG  +  +   + V+ ATNR + LD A LR  R  +++   LPD  TR    RR+ Q   S ++   D +L       + +SG+D+ A+  +A L  +RE
Sbjct:  587 LFAVARELQPSIIFIDEVDSVLSER----SSNEHEATRRLKTEFLVQFDGLPANSEADRIVVMAATNRPQELDEAALR--RFPKRVYVTLPDRDTRELLLRRLLQKQGSPLS---DADLAHLAQLTEGYSGSDLTALARDAALEPIRE 725          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
SPAST_CAEEL1.849e-1334.15Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
PRS2_METTH1.849e-1335.34Putative 26S protease regulatory subunit homolog M... [more]
NSF_CAEEL2.414e-1335.43Vesicle-fusing ATPase OS=Caenorhabditis elegans GN... [more]
PEX6_SCHPO3.153e-1330.57Peroxisomal ATPase pex6 OS=Schizosaccharomyces pom... [more]
PEX6_PICAN3.153e-1336.84Peroxisomal biogenesis factor 6 OS=Pichia angusta ... [more]
FIGL1_CAEBR5.379e-1334.87Fidgetin-like protein 1 OS=Caenorhabditis briggsae... [more]
PEX6_PICPA7.025e-1334.44Peroxisomal biogenesis factor 6 OS=Pichia pastoris... [more]
NSF2_DROME7.025e-1330.68Vesicle-fusing ATPase 2 OS=Drosophila melanogaster... [more]
SPAST_CAEBR9.175e-1334.15Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
SPAST_ANOGA9.175e-1336.49Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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