DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900289_ssr1 microsatellite DC900289_ssr1:1..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4351 contig Csv1_Contig4351:374..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_DICDI (Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 53/143 (37.06%), Postives = 77/143 (53.85%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ--IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            LF VA    PSI+FIDEID++ T+R    S   R   R   E+L Q DG  + GD +V++  ATNR E LD A LR  R+ ++I   LP+++TR +I Q  +   R +L     +         +SG D+ A+C +A    +R
Sbjct:  468 LFAVATHFQPSIIFIDEIDSLLTERSSNESEASR---RLKTEILVQFDGARTNGDERVLVMGATNRPEDLDDAALR--RLVKRIYVGLPELETRLQIIQHLLVGQRHSLTKQ-QINSLAEVTQGYSGFDLAALCKDAAYEPIR 604          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 50/150 (33.33%), Postives = 79/150 (52.67%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRI-FQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            E E+    LF VA    P+++FIDEID++ ++R D      R I+    E L QLDG  +  + ++++  ATNR + +D A  R  R+ +++  PLP+   R++I   + +       D   E  V   D FSGAD+  +C EA L  +R
Sbjct:  480 EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGPIR 624          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 51/151 (33.77%), Postives = 80/151 (52.98%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ-IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+    LF VA +L PSI+FIDEID++  +R +      R   R   E L + DG  S GD +V++  ATNR + LD A+LR  R  ++I   LP  +TR ++ + + +          L +     D +SG+D+ ++  +A L  +RE
Sbjct:  371 EGEKLVRALFAVARELQPSIIFIDEIDSLLCERREGEHDASR---RLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLR--RFAKRIYVALPTEETRLKLLKNLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIRE 516          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FIGL1_MOUSE (Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 49/150 (32.67%), Postives = 79/150 (52.67%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            E E+    LF VA    P+++FIDEID++ ++R D      R I+    E L QLDG  +  + ++++  ATNR + +D A  R  R+ +++  PLP+   R++I   + +       D   +  V   D FSGAD+  +C EA L  +R
Sbjct:  486 EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMTQLCREASLGPIR 630          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 48/151 (31.79%), Postives = 80/151 (52.98%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E ++    +F +A  L PSI+FIDEID+    R    S  + E    M  + ++  DG D+  + +VI+  ATNR + LD A+LR  R+  +     P+++ R+ I ++      +   V L E     D FSG+D++ +C +A LL +R+
Sbjct:  173 ESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDYNCQVIIMGATNRPQDLDSAILR--RMPTRFHINQPNVRQRKDILKLILENENVESAVELSEIAKQTDGFSGSDLREMCRDAALLCVRD 317          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 51/151 (33.77%), Postives = 83/151 (54.97%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF--QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            E E+    LF VA    P+++FIDEID++ ++R +      R I+    E L QLDG  +  D ++++  ATNR + +D A  R  R+ +++  PLP+   R++I    +     +LA+   +E  V+  D FSGAD+  +C EA L  +R
Sbjct:  459 EGEKMVRALFTVARCHQPAVIFIDEIDSLLSQRGEGEHESSRRIK---TEFLVQLDGATTSSDDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVSLMAKEHCSLAEQ-EVEAIVLQADGFSGADMTQLCREAALGPIR 603          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_XENTR (Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 51/151 (33.77%), Postives = 82/151 (54.30%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM-TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+    LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S GD +V++  ATNR + LD A+LR  R  +++   LP+ +TR  + +   S+     ++  L +     + +SG+DI A+  +A L  +RE
Sbjct:  405 EGEKLVRALFSVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVSLPNEETRLLLLKNLLSKQGNPLNEKELTQLSRLTEGYSGSDITALAKDAALGPIRE 550          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PEX1_YEAST (Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae GN=PEX1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 46/150 (30.67%), Postives = 74/150 (49.33%), Query Frame = 2
Query:    8 EREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS---------RMTLADDVNLEEFVMTKDEFSGADIKAICTEAGL 430
            E+   +LF  A  + P I+F DE D++  KR    +G      R + +LL Q+DG +    V ++ AT+R + +D ALLRPGR+D+ +   +P    R  I Q   +         +  L  + +L+        FSGAD++ +C  A L
Sbjct:  776 EQNIRELFERAQSVKPCILFFDEFDSIAPKRGHDSTG---VTDRVVNQLLTQMDGAEGLDGVYILAATSRPDLIDSALLRPGRLDKSVICNIPTESERLDILQAIVNSKDKDTGQKKFALEKNADLKLIAEKTAGFSGADLQGLCYNAYL 922          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEEL (Fidgetin-like protein 1 OS=Caenorhabditis elegans GN=figl-1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 52/152 (34.21%), Postives = 86/152 (56.58%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ--IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+    LF VA    PS++FIDEID++ + R ++     R I+    E L QLDG ++  D ++++  ATNR + LD A  R  R  +++   LP+ ++R +I Q  +  +R  + +  NLE      D +SGAD++ +CTEA +  +R+
Sbjct:  392 EGEKLVRALFSVARLKLPSVIFIDEIDSLLSSRSESEHESSRRIK---TEFLVQLDGVNTAPDERLLVLGATNRPQELDEAARR--RFQKRLYIALPEPESRTQIVQNLLVGTRHDITNH-NLERIRELTDGYSGADMRQLCTEAAMGPIRD 537          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS2_METTM (Putative 26S protease regulatory subunit homolog MTH1011 OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 49/159 (30.82%), Postives = 82/159 (51.57%), Query Frame = 2
Query:   11 REREDLFRVADDLSPSIVFIDEIDAVG-TKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGL---LALRERRMKVTHTDF 475
            R+  +L+ +A   +PS++FIDE+DA+G  +R+ +  G   ++   +  LL ++DG +    V  I ATN  E LD A+    R + +IEF LP    RR + + +   M L  D ++++ V      SG DIK    +  L   LA    R++  H ++
Sbjct:  203 RQIHELYELASKTAPSVIFIDEMDAIGLDRRFQSLRG---DVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDNAI--RSRFEEEIEFKLPGDDERRMMLEKYIETMPLDVDFSVDKLVKLTKGMSGRDIKERVLKTALHRALADESPRVEREHIEY 356          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
SPAST_DICDI1.198e-1237.06Spastin OS=Dictyostelium discoideum GN=DDB_G028716... [more]
FIGL1_RAT1.198e-1233.33Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fi... [more]
SPAST_DANRE1.565e-1233.77Spastin OS=Danio rerio GN=spast PE=2 SV=2[more]
FIGL1_MOUSE2.044e-1232.67Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 ... [more]
ATD1B_DANRE2.044e-1231.79ATPase family AAA domain-containing protein 1-B OS... [more]
FIGL1_XENTR2.669e-1233.77Fidgetin-like protein 1 OS=Xenopus tropicalis GN=f... [more]
SPAST_XENTR3.486e-1233.77Spastin OS=Xenopus tropicalis GN=spast PE=2 SV=1[more]
PEX1_YEAST3.486e-1230.67Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisia... [more]
FIGL1_CAEEL3.486e-1234.21Fidgetin-like protein 1 OS=Caenorhabditis elegans ... [more]
PRS2_METTM4.553e-1230.82Putative 26S protease regulatory subunit homolog M... [more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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