DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900289_ssr1 microsatellite DC900289_ssr1:1..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4351 contig Csv1_Contig4351:374..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 50/151 (33.11%), Postives = 78/151 (51.66%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E ++    +F +A  L PSI+FIDEID+    R    S  + E    M  + ++  DG D+    +VI+  ATNR + LD A++R  R+  +     P +K R  I ++      +   V+L E     D FSG+D+K +C +A LL +RE
Sbjct:  169 ESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVRE 313          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 50/151 (33.11%), Postives = 78/151 (51.66%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E ++    +F +A  L PSI+FIDEID+    R    S  + E    M  + ++  DG D+    +VI+  ATNR + LD A++R  R+  +     P +K R  I ++      +   V+L E     D FSG+D+K +C +A LL +RE
Sbjct:  169 ESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVRE 313          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 50/151 (33.11%), Postives = 78/151 (51.66%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E ++    +F +A  L PSI+FIDEID+    R    S  + E    M  + ++  DG D+    +VI+  ATNR + LD A++R  R+  +     P +K R  I ++      +   V+L E     D FSG+D+K +C +A LL +RE
Sbjct:  169 ESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNR----SSSDHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVRE 313          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_XENLA (Spastin OS=Xenopus laevis GN=spast PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 51/151 (33.77%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM-TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+    LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S GD +V++  ATNR + LD A+LR  R  +++   LP+ +TR  + +   S+      +  L +     + +SG+DI A+  +A L  +RE
Sbjct:  402 EGEKLVRALFSVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSGGDDRVLVMGATNRPQELDDAVLR--RFTKRVYVALPNEETRLVLLKNLLSKQGNPLSEKELTQLSRLTEGYSGSDITALAKDAALGPIRE 547          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 48/150 (32.00%), Postives = 81/150 (54.00%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRI-FQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            E E+    LF VA    P+++FIDEID++ ++R +      R I+    E L QLDG  +  + ++++  ATNR + +D A  R  R+ +++  PLP+   R++I   + +       +  +E  V+  D FSGAD+  +C EA L  +R
Sbjct:  458 EGEKMVRALFTVARCHQPAVIFIDEIDSLLSQRGEGEHESSRRIK---TEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVVSLMSKEHCSLTEQEVEAIVLQADGFSGADMTQLCREAALGPIR 602          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: TBP6_YEAST (Probable 26S protease subunit YTA6 OS=Saccharomyces cerevisiae GN=YTA6 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 52/168 (30.95%), Postives = 84/168 (50.00%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD---------VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTR-RRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E E+    LF +A  LSPSI+FIDEID++ T R D  +   R I+  +L   + L    ++ +         V V+ ATN   ++D A  R  R  RK+  PLPD +TR   + ++   +     D++ E      + FSG+D+ ++  EA +  +R+   K+   DF
Sbjct:  547 ESEKLVRALFYMAKKLSPSIIFIDEIDSMLTARSDNENESSRRIKTELLIQWSSLSSATAQSEDRNNTLDSRVLVLGATNLPWAIDDAARR--RFSRKLYIPLPDYETRLYHLKRLMAKQKNSLQDLDYELITEMTEGFSGSDLTSLAKEAAMEPIRDLGDKLMFADF 712          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_RAT (Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ-IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+    LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S GD +V++  ATNR + LD A+LR  R  +++   LP+ +TR  + + +   + +      L +     D +SG+D+ A+  +A L  +RE
Sbjct:  383 EGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 528          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_PIG (Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ-IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+    LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S GD +V++  ATNR + LD A+LR  R  +++   LP+ +TR  + + +   + +      L +     D +SG+D+ A+  +A L  +RE
Sbjct:  415 EGEKLVRALFAVARELQPSIIFIDEVDSLLRERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARLTDGYSGSDLTALAKDAALGPIRE 560          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_MOUSE (Spastin OS=Mus musculus GN=Spast PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ-IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+    LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S GD +V++  ATNR + LD A+LR  R  +++   LP+ +TR  + + +   + +      L +     D +SG+D+ A+  +A L  +RE
Sbjct:  416 EGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 561          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_HUMAN (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ-IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+    LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S GD +V++  ATNR + LD A+LR  R  +++   LP+ +TR  + + +   + +      L +     D +SG+D+ A+  +A L  +RE
Sbjct:  418 EGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 563          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
ATAD1_RAT4.553e-1233.11ATPase family AAA domain-containing protein 1 OS=R... [more]
ATAD1_MOUSE4.553e-1233.11ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN4.553e-1233.11ATPase family AAA domain-containing protein 1 OS=H... [more]
SPAST_XENLA5.947e-1233.77Spastin OS=Xenopus laevis GN=spast PE=2 SV=1[more]
FIGL1_XENLA5.947e-1232.00Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]
TBP6_YEAST7.767e-1230.95Probable 26S protease subunit YTA6 OS=Saccharomyce... [more]
SPAST_RAT7.767e-1233.11Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1[more]
SPAST_PIG7.767e-1233.11Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=... [more]
SPAST_MOUSE7.767e-1233.11Spastin OS=Mus musculus GN=Spast PE=2 SV=3[more]
SPAST_HUMAN7.767e-1233.11Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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