DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900289_ssr1 microsatellite DC900289_ssr1:1..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4351 contig Csv1_Contig4351:374..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_DROAN (Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 50/145 (34.48%), Postives = 77/145 (53.10%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGD---VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            LF VA  + PSI+FIDE+D++ ++R    S  E E  R +  E L + DG     D   + V+ ATNR + LD A LR  R  +++   LPD +TR  +  ++   + +  D   L     T D +SG+D+ A+  +A L  +RE
Sbjct:  579 LFAVARHMQPSIIFIDEVDSLLSER----SSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLSRLLQKQGSPLDTEALRRLAKTTDGYSGSDLTALAKDAALEPIRE 717          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 43/139 (30.94%), Postives = 69/139 (49.64%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL-ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAIC 415
            E ++    +F VA    P+I+FIDEID+      D  S           + +   DGF S GD  +++ ATNR   +D A+LR  R+  + + P+P+ K R +I  +      + + VNL E     +  SG+D+K +C
Sbjct:  160 ESQKLAAAVFSVAQKFQPTIIFIDEIDSF---LRDRQSHDHESTAMMKAQFMTLWDGFSSSGDQIIVMGATNRPRDVDAAILR--RMTARFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVC 293          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: YCF46_GUITH (Uncharacterized AAA domain-containing protein ycf46 OS=Guillardia theta GN=ycf46 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 47/153 (30.72%), Postives = 76/153 (49.67%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGT-KRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMT--KDEFSGADIKAICTEAGLLALRERR 451
            E E     + + A+ +SP I++IDEID   T   ++  SG  + +  T +  L++      +  V V+   N I+SL P LLR GR D      LPD+K R  IF++H  ++        +  +++   + FSGA+I+    EA  +A  E R
Sbjct:  318 ESEARVRQMIQFAETISPCILWIDEIDKAFTGSNFNNDSGTTKRVFGTFITWLSE-----KKSPVFVVATANNIDSLPPELLRKGRFDEVFFIGLPDLKERECIFKVHLKKIRPKSWSTYDTEILSAQSNRFSGAEIEESIYEAMHIAFNENR 465          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 51/145 (35.17%), Postives = 77/145 (53.10%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGD---VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            LF VA  L PSI+FIDE+D++ ++R    S GE E  R +  E L + DG     D   + V+ ATNR + LD A LR  R  +++   LPD +TR  +  ++   + +  D   L       D +SG+D+ A+  +A L  +RE
Sbjct:  597 LFAVARHLQPSIIFIDEVDSLLSER----SSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIRE 735          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 51/145 (35.17%), Postives = 77/145 (53.10%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGD---VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            LF VA  L PSI+FIDE+D++ ++R    S GE E  R +  E L + DG     D   + V+ ATNR + LD A LR  R  +++   LPD +TR  +  ++   + +  D   L       D +SG+D+ A+  +A L  +RE
Sbjct:  597 LFAVARHLQPSIIFIDEVDSLLSER----SSGEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEPIRE 735          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 49/142 (34.51%), Postives = 74/142 (52.11%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTL-ADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            +F +A+ L P I+FIDEID+   +R    S  + E+  T+  E +   DG  + G V +I ATNRI  +D A LR  R+ ++    LP    R +I  +      L  D+ +L+        FSG+D+K +C EA L A +E
Sbjct:  177 MFSLANKLQPCIIFIDEIDSFLRER----SSTDHEVTATLKAEFMTLWDGLLNNGRVMIIGATNRINDIDDAFLR--RLPKRFLVSLPGSDQRYKILSVLLKDTKLDEDEFDLQLIADNTKGFSGSDLKELCREAALDAAKE 312          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_CHICK (Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM-TLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+    LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S G+ ++++  ATNR + LD A+LR  R  +++   LP+ +TR  + +   S+  +      L +     D +SG+D+ A+  +A L  +RE
Sbjct:  415 EGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSSGEDRILVMGATNRPQELDDAVLR--RFTKRVYVSLPNEETRLILLKNLLSKQGSPLTQKELAQLARMTDGYSGSDLTALVKDAALGPIRE 560          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 48/142 (33.80%), Postives = 77/142 (54.23%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRM-TLADDVNLEEFVMTKDEFSGADIKAICTEA 424
            E ER    LF +A +  PSI+FIDEID++   R +  S   R I+   L  +N + G D  G V V+ ATN   +LD A+ R  R +++I  PLP+   R R+F+++  ++ +     + +E     D +SG+DI  +  +A
Sbjct:  205 ESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEGESESSRRIKTEFLVQMNGV-GKDESG-VLVLGATNIPWTLDSAIRR--RFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDA 342          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ-IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+    LF VA +L PSI+FIDE+D++  +R +      R   R   E L + DG  S GD +V++  ATNR + LD A+LR  R  +++   LP+ +TR  + + +   + +      L +     + +SG+D+ A+  +A L  +RE
Sbjct:  416 EGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASR---RLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFTKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTNGYSGSDLTALAKDAALGPIRE 561          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 49/150 (32.67%), Postives = 80/150 (53.33%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL-ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT-SRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+  ++LF +A    PSI+FIDE+D++   R +  S   R I+    E L Q+ G  +  D  ++L ATN    LD A+ R  R +++I  PLP+   R ++F++H  S      D N+ E     + +SGADI  I  ++ +  +R+
Sbjct:  204 ESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIK---TEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRK 348          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
SPAST_DROAN7.767e-1234.48Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1[more]
MSP1_CAEEL7.767e-1230.94Mitochondrial sorting homolog OS=Caenorhabditis el... [more]
YCF46_GUITH1.014e-1130.72Uncharacterized AAA domain-containing protein ycf4... [more]
SPAST_DROPS1.014e-1135.17Spastin OS=Drosophila pseudoobscura pseudoobscura ... [more]
SPAST_DROPE1.014e-1135.17Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]
MSP1_YEAST1.014e-1134.51Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]
SPAST_CHICK1.325e-1132.45Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1[more]
VPS4_SCHPO1.730e-1133.80Suppressor protein of bem1/bed5 double mutants OS=... [more]
SPAST_BOVIN1.730e-1132.45Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
VPS4A_RAT2.260e-1132.67Vacuolar protein sorting-associated protein 4A OS=... [more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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