DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900289_ssr1 microsatellite DC900289_ssr1:1..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4351 contig Csv1_Contig4351:374..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 49/150 (32.67%), Postives = 80/150 (53.33%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL-ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT-SRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+  ++LF +A    PSI+FIDE+D++   R +  S   R I+    E L Q+ G  +  D  ++L ATN    LD A+ R  R +++I  PLP+   R ++F++H  S      D N+ E     + +SGADI  I  ++ +  +R+
Sbjct:  204 ESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIK---TEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRK 348          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 49/150 (32.67%), Postives = 80/150 (53.33%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVIL-ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT-SRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+  ++LF +A    PSI+FIDE+D++   R +  S   R I+    E L Q+ G  +  D  ++L ATN    LD A+ R  R +++I  PLP+   R ++F++H  S      D N+ E     + +SGADI  I  ++ +  +R+
Sbjct:  204 ESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESEAARRIK---TEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRK 348          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 54/152 (35.53%), Postives = 82/152 (53.95%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGERE-IQRTMLELLNQLDGFDSRGDVKVIL--ATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQ--IHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALR 442
            + E+  + LF VA    P+I+FIDE+D++ +KR    S  E E   R   E L  LDG  S  +++V++  ATNR + LD A+ R  R  R++  PLP  + R++I +  IH  +  L D   + E     D +SGAD+  +C  A +  LR
Sbjct:  326 DAEKLVKTLFAVAAAHQPAIIFIDEVDSLLSKR----SANENESTLRLKNEFLIHLDGAASNEEIRVLVIGATNRPQELDEAVRR--RFVRRLYVPLPTREARQKIIEKLIHQVKHNL-DVRQVIELAELTDGYSGADVDTLCRYASMAPLR 470          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 50/145 (34.48%), Postives = 79/145 (54.48%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGF--DSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            LF VA  L PSI+FIDE+D++ ++R    S  E E  R +  E L + DG   +  GD + V+ ATNR + LD A LR  R  +++   LP+++TR  +  ++   + +  D   L       D +SG+D+ A+  +A L  +RE
Sbjct:  574 LFAVARHLQPSIIFIDEVDSLLSER----SSNEHEASRRLKTEFLVEFDGLPGNPEGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPEVQTRELLLSRLLQKQGSPLDTEALARLAKITDGYSGSDLTALAKDAALEPIRE 712          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 50/150 (33.33%), Postives = 80/150 (53.33%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD-VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHT-SRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            E E+  ++LF++A +  PSI+FIDEID++   R +  S   R I+    E L Q+ G     D + V+ ATN    LD A+ R  R +++I  PLP+   R  +F++H  S      + + +E     D +SGADI  I  +A +  +R+
Sbjct:  211 ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIK---TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_DROYA (Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            LF VA  + PSI+FIDE+D++ ++R  +     R ++   L   + L G      + V+ ATNR + LD A LR  R  +++   LPD +TR  +  ++   + +  D   L       D +SG+D+ A+  +A L  +RE
Sbjct:  567 LFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 705          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_DROSE (Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            LF VA  + PSI+FIDE+D++ ++R  +     R ++   L   + L G      + V+ ATNR + LD A LR  R  +++   LPD +TR  +  ++   + +  D   L       D +SG+D+ A+  +A L  +RE
Sbjct:  567 LFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 705          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_DROME (Spastin OS=Drosophila melanogaster GN=spas PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            LF VA  + PSI+FIDE+D++ ++R  +     R ++   L   + L G      + V+ ATNR + LD A LR  R  +++   LPD +TR  +  ++   + +  D   L       D +SG+D+ A+  +A L  +RE
Sbjct:  567 LFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 705          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 48/145 (33.10%), Postives = 77/145 (53.10%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTM-LELLNQLDGFDSRGD---VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            LF VA  + PSI+FIDE+D++ ++R    S  E E  R +  E L + DG     D   + V+ ATNR + LD A LR  R  +++   LPD++TR  +  ++   + +  D   L       + +SG+D+ A+  +A L  +RE
Sbjct:  591 LFAVARHMQPSIIFIDEVDSLLSER----SSNEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDVQTRELLLNRLLQKQGSPLDSDALGRLAKITEGYSGSDLTALAKDAALEPIRE 729          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: SPAST_DROER (Spastin OS=Drosophila erecta GN=spas PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 2
Query:   26 LFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIF-QIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 445
            LF VA  + PSI+FIDE+D++ ++R  +     R ++   L   + L G      + V+ ATNR + LD A LR  R  +++   LPD +TR  +  ++   + +  D   L       D +SG+D+ A+  +A L  +RE
Sbjct:  567 LFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 705          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
VPS4A_MOUSE2.260e-1132.67Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_HUMAN2.260e-1132.67Vacuolar protein sorting-associated protein 4A OS=... [more]
FIGL1_DROME2.260e-1135.53Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]
SPAST_DROMO2.951e-1134.48Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1[more]
VPS4B_MOUSE3.855e-1133.33Vacuolar protein sorting-associated protein 4B OS=... [more]
SPAST_DROYA3.855e-1131.21Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1[more]
SPAST_DROSE3.855e-1131.21Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1[more]
SPAST_DROME3.855e-1131.21Spastin OS=Drosophila melanogaster GN=spas PE=1 SV... [more]
SPAST_DROGR3.855e-1133.10Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
SPAST_DROER3.855e-1131.21Spastin OS=Drosophila erecta GN=spas PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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