DC900289

Overview
NameDC900289
Unique NameDC900289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC900289_ssr1 microsatellite DC900289_ssr1:1..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4351 contig Csv1_Contig4351:374..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.162e-40
Identity = 81/151 (53.64%), Postives = 110/151 (72.85%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            D+F++A + SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR + LDPA+LRPGR DR IE  +PD   R  I +IHT +M L   V+L E     +   GAD+KA+CTEAG+ A+RE R  +   DF
Sbjct:  232 DVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDF 381          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.162e-40
Identity = 83/158 (52.53%), Postives = 115/158 (72.78%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFP-LPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 472
            E  R   D+FR+A + +PSI+FIDE+D++ TKR+DA +G +RE+QR ++ELL Q+DGFD   +VKVI+ATNR ++LDPALLRPGR+DRKIEFP L D + RR IF    S+M+LA + +L+  ++  D  SGA I AI  EAGL A+R+ R  +  +D
Sbjct:  249 EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPYLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSD 406          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.804e-40
Identity = 81/151 (53.64%), Postives = 110/151 (72.85%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            D+F++A + SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR + LDPA+LRPGR DR IE  +PD   R  I +IHT +M L   V+L E     +   GAD+KA+CTEAG+ A+RE R  +   DF
Sbjct:  232 DVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDF 381          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.804e-40
Identity = 81/151 (53.64%), Postives = 110/151 (72.85%), Query Frame = 2
Query:   23 DLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            D+F++A + SP I+FIDEIDAV +KR ++ +GG+RE+QRT+++LL ++DGFDSRGDVK+I ATNR + LDPA+LRPGR DR IE  +PD   R  I +IHT +M L   V+L E     +   GAD+KA+CTEAG+ A+RE R  +   DF
Sbjct:  232 DVFKLAKEKSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDF 381          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.150e-39
Identity = 81/158 (51.27%), Postives = 112/158 (70.89%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   +LF +A   +P+I+FIDEIDAVG  R +A++ G+RE+QRT+++LL  +DGF++RGDVK+I ATNRI+ LD ALLRPGR DR IE PLPD + R  I ++HT  +T+ + VNL E     +  +GAD++AIC EAG+ A+R  R  +T  DF
Sbjct:  255 EGARLVRELFDLAKKKAPTIIFIDEIDAVGASRTEANTSGDREVQRTLMQLLAGMDGFETRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRTLTMEETVNLPEIAGLTEGKNGADLRAICMEAGMYAIRNERPAITREDF 412          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.150e-39
Identity = 80/158 (50.63%), Postives = 110/158 (69.62%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   ++F  A +  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD  G VK+I+ATNR + LDPALLRPGR+DRKIE PLP+ ++R  I +IH S +    +++ E  V   + F+GAD++ ICTEAG+ A+R  R  V H DF
Sbjct:  216 ESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDF 373          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.502e-39
Identity = 80/158 (50.63%), Postives = 108/158 (68.35%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   +LF +A      I+F DEIDAVG  R+D  +GG+ E+QRTMLEL+ QLDGFD RG++KV+ ATNR  +LDPALLRPGRIDRK+EF LPD++ R  IF+IH+  M++   +  E         +GA+++++CTEAG+ A+R RR   T  DF
Sbjct:  286 EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDF 443          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.562e-39
Identity = 79/158 (50.00%), Postives = 111/158 (70.25%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   ++F  A +  P I+F+DEIDA+G +R+   +  +REIQRT++ELLNQLDGFD+ G VK+I+ATNR + LDPALLRPGR+DRKIE PLP+ ++R  I +IH + +    +++ E  V   + F+GAD++ ICTEAG+ A+R  R  V H DF
Sbjct:  216 ESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDF 373          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.346e-39
Identity = 77/158 (48.73%), Postives = 107/158 (67.72%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   DLF +A+   P+I+FIDEIDAV  KR D+ + G+ E+QRTM++LL+++DGFD RGD+++I ATNR + LD A+LRPGR DR IE P P+   R RI +IH   M +AD V+  +      EFSGA + ++ TEAG+ A+R+ R +V   DF
Sbjct:  229 EGSRLVRDLFELAEQKDPAIIFIDEIDAVAAKRTDSKTSGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDSAILRPGRFDRLIEVPNPNPDARERILEIHAGEMNVADSVDFSDLAADTAEFSGAQLASLATEAGMFAIRDDRDEVHRQDF 386          
BLAST of DC900289 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.346e-39
Identity = 80/158 (50.63%), Postives = 109/158 (68.99%), Query Frame = 2
Query:    2 EREREREDLFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 475
            E  R   +LF++A      I+F DEIDA+G  R+D   G + E+QRTMLE+L QLDGFD+RG++KV++ATNR + LDPALLRPGR+DRK+EF LPD++ R +IF+IHT  M+   D+  E         +GADI+++C EAG+ A+  RR  VT  DF
Sbjct:  282 EGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDF 439          
The following BLAST results are available for this feature:
BLAST of DC900289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
PSMR_METMP5.162e-4053.64Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS6B_YEAST5.162e-4052.5326S protease regulatory subunit 6B homolog OS=Sacc... [more]
PSMR_METM68.804e-4053.64Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM58.804e-4053.64Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METB61.150e-3951.27Proteasome-activating nucleotidase OS=Methanoregul... [more]
PS10B_ARATH1.150e-3950.6326S protease regulatory subunit S10B homolog B OS=... [more]
PRS7_YEAST1.502e-3950.6326S protease regulatory subunit 7 homolog OS=Sacch... [more]
PS10A_ARATH2.562e-3950.0026S protease regulatory subunit 10B homolog A OS=A... [more]
PSMR1_HALSA3.346e-3948.73Proteasome-activating nucleotidase 1 OS=Halobacter... [more]
PRS7B_ARATH3.346e-3950.6326S protease regulatory subunit 7 homolog B OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionDC900289 VSS Citrus sinensis cDNA clone VS28635 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900289 ID=DC900289; Name=DC900289; organism=Citrus sinensis; type=EST; length=706bp
AGAGAGAGAGAGAGAGAGAGAGGACCTTTTCAGAGTTGCTGATGATCTGT
CACCTTCTATCGTCTTCATTGATGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GCTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACGAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCTGATATCAAGACTAG
GAGACGTATCTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTCA
TTGTTCTACATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCATCTTTGGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAACCGCTTTGGTTTCT
TTCCGT
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