DC900286
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.438e-24 Identity = 66/150 (44.00%), Postives = 97/150 (64.67%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGI-NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHM-AGIEGSSANVIPSGYPSLYYT----TPPGIVSQVPPRP-GLMYQPLGLRTGWRAN 431 N+Y+KNIDD + +++L+ FSQ GTITSA VM+D+K +KGFGFVC+++P+EA++AV +G M+ KPLYVA+AQRK+ R+A L++Q+ Q GI SG +++T P + Q+ PRP QP+G+ G AN Sbjct: 285 NLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFKTGIRQQMPPTYGSG--PVFFTPAPVNPQVVYQQMMPRPRNWNGQPVGVPQGQYAN 432 HSP 2 Score: 78.1814 bits (191), Expect = 1.142e-13 Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGI 290 NV+ KN+ +DV ++LK Q G IT+ +M D+KG +KGFGF F S E A V +G + H KP+Y AQ+K +R+A L+ + G+ Sbjct: 189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGV 284
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 1.438e-24 Identity = 71/163 (43.56%), Postives = 93/163 (57.06%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDR--------QAHLQLQYAQHMAGIEGSSANVIPSGYPSLY----YTTPPGI----VSQVPPRPGLMYQPLGLRTGWRANGFVP 443 N+++KN+ D+V DE LKA FS GTITSAK+M DE+G +KGFGFVC+++PEEA+KAV + ML KPLYVA+AQRKE R QA Q + Q +A G A + P +Y Y P + + VP G M G+ T + A G P Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYGPGGYPIPAAVNGRGMPMVPGHNGPMPMYPGMPTQFPAGGPAP 527 HSP 2 Score: 73.559 bits (179), Expect = 2.812e-12 Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 275 NVY+KN+D ++T++E F Q G ITS +++D+ +GFGFV +++ E A KAV+ + K LYV AQ+K +R+ L+ +Y Q Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQ 352
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.438e-24 Identity = 61/116 (52.59%), Postives = 78/116 (67.24%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP 350 N+YVKN+DD + D+ L+ FS GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+R+A L QY Q +A + ++ S Y P Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLP 409 HSP 2 Score: 77.0258 bits (188), Expect = 2.544e-13 Identity = 37/91 (40.66%), Postives = 59/91 (64.84%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 275 NVY+KN +D+ D+ L+ FS G S KVM D+ G ++GFGFV + + EEA KAV+ +G ++ + +YV AQ++ +RQ L+ ++ Q Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQ 282 HSP 3 Score: 71.633 bits (174), Expect = 1.072e-11 Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1 Query: 739 LAAASPEQQKQILGERLYPLVEKHKPDLVAKITGMLLQMDNXXXXXXXXXXXXXAVKVEEAVQVLKLSEAKVSTQEA 969 LA+A P++QKQ+LGERLYPL+ + P L KITGMLL++DN KVEEAV VL+ +AK ++Q++ Sbjct: 547 LASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENSQKS 623
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 2.452e-24 Identity = 72/155 (46.45%), Postives = 94/155 (60.65%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPS-GYPSLYYTTPPGIVSQVPPRPGLMYQPLGLRTGWRANGFVPPTRPAFQ 464 N+YVKN+DD + D+ L+ F GTITSAKVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+R+A L QY Q +A + ++ S P+ Y+ +S +P P RT + N V P RPA Q Sbjct: 295 NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYF------LSAMPQPPN--------RTFYSPNP-VAPVRPAPQ 433 HSP 2 Score: 77.7962 bits (190), Expect = 1.491e-13 Identity = 37/91 (40.66%), Postives = 60/91 (65.93%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 275 NVY+KN +D+ D+ L+ FS G S KVM D+ G ++GFGFV + + EEA KAV+ +G ++ + +YV AQ++ +RQ+ L+ ++ Q Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQ 282 HSP 3 Score: 73.1738 bits (178), Expect = 3.686e-12 Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 1 Query: 703 VMARKPDMLNGMLAAASPEQQKQILGERLYPLVEKHKPDLVAKITGMLLQMDNXXXXXXXXXXXXXAVKVEEAVQVLKLSEAKVSTQEAIHPNYL 987 +M + + +LA A P++QKQ+LGER+YP++ + P L KITGMLL++DN KVEEAV VL+ +AK + Q++ P+ + Sbjct: 535 LMQGQEPLTASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKENAQKSAQPSLI 629
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 4.183e-24 Identity = 60/116 (51.72%), Postives = 77/116 (66.38%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGYPSLYYTTP 350 N+YVKN+DD + D+ L+ FS GTITS KVM E G +KGFGFVCFSSPEEA+KAV +G ++ KPLYVA+AQRKE+R+A L QY Q +A + ++ S Y P Sbjct: 295 NLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMT-EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLP 409 HSP 2 Score: 77.0258 bits (188), Expect = 2.544e-13 Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 275 NVY+KN +D+ D+ LK FS G S KVM D G ++GFGFV + + EEA KAV +G ++ + +YV AQ++ +RQ L+ ++ Q Sbjct: 192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQ 282 HSP 3 Score: 69.3218 bits (168), Expect = 5.322e-11 Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = 1 Query: 685 LLNSGGVMARKPDMLNGMLAAASPEQQKQILGERLYPLVEKHKPDLVAKITGMLLQMDNXXXXXXXXXXXXXAVKVEEAVQVLKLSEAKVSTQEA 969 +L +M + + +LAAA ++QKQILGER+YPL+ + P L KITGMLL++DN KVEEAV VL+ +AK S ++ Sbjct: 529 VLEPAVLMQGQEPLTASLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKESAPKS 623
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 7.136e-24 Identity = 62/141 (43.97%), Postives = 84/141 (59.57%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQHMAGIEGSSANVIPSGY--PSLYYTTP---PGIVSQVPPRPGLMYQPLGL 410 N+Y+KNI + DE L+ F+ G ITS K+MR G+++GFGFVC+S+PEEA+KAV+ +G ML +PLYVA+AQRK+ R+ L+ Q Q A GY P +YY P PG + PRP Y P G+ Sbjct: 331 NLYLKNIPESYDDERLREEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYPGPGMYYPQPGAFPGQPGGMVPRP--RYAPAGM 469 HSP 2 Score: 81.6481 bits (200), Expect = 1.033e-14 Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 NVY KN+D +VTD+E + F++ G ITS + RDE G +KGFGFV F EA KAV+ H + L+VA AQ+K +R+ L+ Y Sbjct: 228 NVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 316
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.712e-23 Identity = 61/144 (42.36%), Postives = 92/144 (63.89%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQ-YAQHMAGIEGSSANVIPSGY-PSLYYTT----PPGIVSQVP---PRPGLMYQPLG 407 N++VKN+DD + E+L+ F GTITSAKVM DE G +KGFGFVCF++PEEA+KA+ + M++ KPLYVA+AQRK+ R++ L+ Q A++ ++ ++A +P + P ++Y PP P P P +M + G Sbjct: 337 NLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAGGLPGQFIPPMFYGQQGFFPPNGRGNAPYPGPNPQMMMRGRG 480 HSP 2 Score: 70.4774 bits (171), Expect = 2.381e-11 Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 N+YVKNID + ++E + FS G ITS + +D+ G +KGFGFV F E A KAV + ++ + +YV AQ+K +R L+ QY Sbjct: 234 NIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQY 322
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 3.541e-23 Identity = 56/121 (46.28%), Postives = 81/121 (66.94%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY-PSLYYTTPPG 356 N+++KN+DD + E+L+ F G+ITSA+VM DE G +KGFGFVCFSSPEEA+KA+ + M++ KPLYVA+AQRK+ R++ L Q+Q M ++ IP + P ++Y PG Sbjct: 336 NLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPPMFYGQQPG 456 HSP 2 Score: 73.9442 bits (180), Expect = 2.153e-12 Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 NVY KNID D ++EE K F G ITS + +D +G +KGFGFV F + E A KAV+ + ++ + +YV AQ+K +R L+ QY Sbjct: 233 NVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQY 321
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 4.625e-23 Identity = 61/142 (42.96%), Postives = 86/142 (60.56%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGYPS-LYYTTPPGIV---------SQVPPRPGLM 392 N++VKN+DD + E+L+ F GTITSA+VM D+ G +KGFGFVCFSSPEEA+KA+ + M+ KPLYVA+AQRK+ R++ L Q+Q M ++A +P + S ++Y PG PP P +M Sbjct: 343 NLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAAAAGMPGQFMSPMFYGQQPGFFPPNGRGGAQGPFPPNPQMM 484
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.030e-22 Identity = 67/170 (39.41%), Postives = 93/170 (54.71%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHL--QLQYAQHMAGIEGSSANVIPSGY-PSLYYTT----PPGIVSQVP---PRPGLMY---QPLGLRTGWRANGFVPPTRPAFQVSP 473 N+++KN+DD + E+L+ F GTITSA+VM DE G +KGFGFVCFSSPEEA+KA+ + M KPLYVA+AQRK+ R++ L Q+Q M ++ IP + P ++Y PP P P P ++ QP G W G P + + P Sbjct: 337 NLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIPPMFYGQQGFFPPNGRGNAPFPGPNPQMIMRRGQPFGGPEQWPRPGPNGQPVPVYGIPP 506 HSP 2 Score: 72.7886 bits (177), Expect = 4.797e-12 Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269 N+YVKNID + ++E+LK F+ G ITS + +D +G +KGFGFV + E A KAV + ++ + +YV AQ+K +R L+ QY Sbjct: 234 NIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQY 322 The following BLAST results are available for this feature:
BLAST of DC900286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 52
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900286 ID=DC900286; Name=DC900286; organism=Citrus sinensis; type=EST; length=1248bpback to top |