DC900286
|
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 9.341e-16 Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269
NVY+KNID DVT+EE + F + G ITSA + RD++G ++GFGFV FS+ E A AV+ + + + LYV AQ+K +R+ L+ QY
Sbjct: 231 NVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQY 319 HSP 2 Score: 74.3294 bits (181), Expect = 1.649e-12 Identity = 52/133 (39.10%), Postives = 78/133 (58.65%), Query Frame = 3 Query: 102 DEKGI--NKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQ--LQYAQHMAGIEGSSANVIPSGY--PSLYYTTPPGIVSQVP-PRPGLMYQPLGLRTGWRANGFVPPTRPAFQVSPLP 479
D+KG+ +KGFGFVCFSSP+EASKAV + M++ KPLYVA+AQRK+ R++ L+ +Q + + ++A +P Y P+++Y PG +P R G+ + P + G G +P RP P P
Sbjct: 425 DKKGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFY--GPGQQGFIPGQRGGIAFPP---QPGMVMAG-IPGGRPGQYPGPFP 551
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 1.593e-15 Identity = 39/76 (51.32%), Postives = 58/76 (76.32%), Query Frame = 3 Query: 6 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQR 233
+Y+KN+DD + DE+L+ FS G+I+ KVM++E G +KGFG +CFSSPE+A+KA+ +G +L KPL +A+AQR
Sbjct: 295 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369 HSP 2 Score: 80.1073 bits (196), Expect = 3.005e-14 Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQYAQ 275
NVY+KN D+ DE LK FS+ G S KVM D G +KGFGFV F S E A KAV +G ++ + ++V AQ+K +RQA L+ + Q
Sbjct: 191 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 281
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 2.718e-15 Identity = 70/223 (31.39%), Postives = 92/223 (41.26%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAK------VMRDEK---------------------------------------------------GINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQL----------QYAQHMAGIE-----------GSSANVIPSGYPSLYYTTPPGIVSQVP-PRPGLMYQPLGLRTGWRANG 434
N+YVKN+ DD+ DE+L+ F GTITSAK V RD+ G +KGFGFVCFSSP+EASKAV + M++ KPLYVA+AQRK+ R++ L+ Q A AG+ IP G + + PG+V +P RPG P + G R G
Sbjct: 339 NLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEKAEEKPSESSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIRQQQAAAAAGMPQPYMQPAVFYGPGQQGFIPGGQRGMAFPPQPGMVMGIPGGRPGQYPGPFPGQQGGRGMG 561 HSP 2 Score: 80.8777 bits (198), Expect = 1.762e-14 Identity = 38/89 (42.70%), Postives = 58/89 (65.17%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269
NVY+KN+D ++ D+E + F + G ITSA + RD++G ++GFGFV FS+ E A AV + + + LYV AQ+K +R+ L+ QY
Sbjct: 236 NVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQY 324
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 7.908e-15 Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269
NV+VKNI DD+ DE+LK F + G S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A L+ ++
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288 HSP 2 Score: 78.9518 bits (193), Expect = 6.694e-14 Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 3 Query: 6 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 236
+Y+KN+D+ + DE+LK FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q +
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 7.908e-15 Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269
NV+VKNI DD+ DE+LK F + G S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A L+ ++
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288 HSP 2 Score: 78.9518 bits (193), Expect = 6.694e-14 Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 3 Query: 6 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 236
+Y+KN+D+ + DE+LK FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q +
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 7.908e-15 Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269
NV+VKNI DD+ DE+LK F + G S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A L+ ++
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288 HSP 2 Score: 78.9518 bits (193), Expect = 6.694e-14 Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 3 Query: 6 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 236
+Y+KN+D+ + DE+LK FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q +
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQAR 379
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 7.908e-15 Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269
NV+VKNI DD+ DE+LK F + G S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A L+ ++
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288 HSP 2 Score: 78.9518 bits (193), Expect = 6.694e-14 Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 3 Query: 6 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 236
+Y+KN+D+ + DE+LK FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q +
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 7.908e-15 Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269
NV+VKNI DD+ DE+LK F + G S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A L+ ++
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288 HSP 2 Score: 78.9518 bits (193), Expect = 6.694e-14 Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 3 Query: 6 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 236
+Y+KN+D+ + DE+LK FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q +
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 7.908e-15 Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269
NV+VKNI DD+ DE+LK F + G S KV+RD G +KGFGFV + + E A KAV HG + K LYV AQ+K +R A L+ ++
Sbjct: 200 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288 HSP 2 Score: 78.9518 bits (193), Expect = 6.694e-14 Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 3 Query: 6 VYVKNIDDDVTDEELKAHFSQCGTITSAKVMRDEKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRK 236
+Y+KN+D+ + DE+LK FS G+I+ AKVM E G KGFG VCFSS EEA+KAV+ +G ++ KPL+V + Q +
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
BLAST of DC900286 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.301e-14 Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 3 Query: 3 NVYVKNIDDDVTDEELKAHFSQCGTITSAKVMRD-EKGINKGFGFVCFSSPEEASKAVNTFHGYMLHRKPLYVAIAQRKEDRQAHLQLQY 269
N+YVKNI+ +VTD+E + F + G +TS+ + RD E G ++GFGFV F+S E+ASKAV + H + LYV AQ+K +R+ L+ Y
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSY 332 The following BLAST results are available for this feature:
BLAST of DC900286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 52 ZOOMx 1POSITION0
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DC900286 ID=DC900286; Name=DC900286; organism=Citrus sinensis; type=EST; length=1248bpback to top |