DC900280

Overview
NameDC900280
Unique NameDC900280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.440e-29
Identity = 78/191 (40.84%), Postives = 100/191 (52.36%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAP--ISINGFPCK-PASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN--NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVI 616
            ASDP  LQD CV+   +   + +NG  CK P                          VT  +V     +NT G+SL RID  V G NPPHTHPRATE  +V  G +LVGFVT+N  N  F+KVL  G VF+ P   +HFQ N+GK  A      +SQNPGV     T+F  NP++  ++L K+F V   V+
Sbjct:   24 ASDPSQLQDFCVSANSSANGVFVNGKFCKDPKLVTADDFFFPGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVDGQNPPHTHPRATEILVVELGTLLVGFVTSNPDNRLFTKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIAPTVFGANPAINPNILAKAFQVDPRVV 214          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL19_ARATH (Putative germin-like protein subfamily 1 member 9 OS=Arabidopsis thaliana GN=At5g38910 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.874e-28
Identity = 80/194 (41.24%), Postives = 101/194 (52.06%), Query Frame = 2
Query:   53 SHASDPDPLQDICVADLDAP---ISINGFPCK-PASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN--NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVI 616
            S ASDP  LQD CV  ++ P   + +NG  CK P                          VT  +V   P +NT G+SL RID GV G NPPHTHPRA+E   V  G + VGFVT+N  N  FSK L  G VF+ P+  +HFQ+NVGK  A      +SQNPGV     T+F +NP +  S L  +F V   ++
Sbjct:   20 SKASDPSSLQDFCVG-VNTPADGVFVNGKFCKDPKLVTVEDFFFTGLHEARPPNPKTGSNVTAVNVNNLPGLNTLGISLVRIDYGVYGQNPPHTHPRASEVLYVAVGTLFVGFVTSNPENRLFSKTLYEGDVFVFPQGLIHFQVNVGKYPAVAFAGLSSQNPGVITIADTVFGSNPQIDPSFLASAFQVDPKIV 212          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.874e-28
Identity = 74/199 (37.19%), Postives = 106/199 (53.27%), Query Frame = 2
Query:   53 SHASDPDPLQDICVA--DLDAPISINGFPCK-PASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTT---NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            + A DP PLQD CVA  DL   + +NG  CK P                       +  VT  +V   P +NT G+SL RID    G NPPHTHPRATE  ++++G + VGFV++   NN  F+KVL PG VF+ P   +HFQ+N+GK  A      +SQN GV     T+F + P +   +L ++F +  +++  + +
Sbjct:   20 AEAYDPSPLQDFCVAIDDLKNGVFVNGKFCKDPKQAKAEDFFFSGLNQAGSTNNKVRSNVTTVNVDQIPGLNTMGISLVRIDYAPYGQNPPHTHPRATEILVLIEGTLYVGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNIVKDLEA 218          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL25_ARATH (Probable germin-like protein subfamily 2 member 5 OS=Arabidopsis thaliana GN=At5g26700 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.447e-28
Identity = 67/185 (36.22%), Postives = 100/185 (54.05%), Query Frame = 2
Query:   77 LQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRAVTFG-DVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIR 628
            LQD+CVADL   + +NG+ CK ++++                     +V  G +V   P +NT G+S+ RID    G+NPPH HPRA+E   VL+G++ VGFVTT     +K L  G VF  P+  +HFQ N+    A+ +  F+SQ PG    V +LF    ++P+ +L KSF +    +  I+
Sbjct:   25 LQDVCVADLSNAVKVNGYTCKDSTQITPEDFYFKGLANIAATNTSTGSVVTGANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFVTTAGKLIAKNLNKGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLFG---ALPDDILAKSFQLKHKQVKKIK 206          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.175e-28
Identity = 76/198 (38.38%), Postives = 106/198 (53.54%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAP---ISINGFPCK-PASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTT---NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            A DP PLQD CVA +D P   + +NG  CK P                       K  VT  +V   P +NT G+SL RID    G NPPHTHPRATE  ++++G + VGFV++   NN  F+KVL PG VF+ P   +HFQ+N+GK  A      +SQN GV     T+F + P +   +L ++F +  +V+  + +
Sbjct:   21 AYDPSPLQDFCVA-IDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVKSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEA 217          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.215e-27
Identity = 75/198 (37.88%), Postives = 106/198 (53.54%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAP---ISINGFPCK-PASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTT---NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            A DP PLQD CVA +D P   + +NG  CK P                       +  VT  +V   P +NT G+SL RID    G NPPHTHPRATE  ++++G + VGFV++   NN  F+KVL PG VF+ P   +HFQ+N+GK  A      +SQN GV     T+F + P +   +L ++F +  +V+  + +
Sbjct:   21 AYDPSPLQDFCVA-IDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDLEA 217          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL112_ARATH (Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana GN=At5g38960 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.072e-27
Identity = 76/193 (39.38%), Postives = 101/193 (52.33%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPIS---INGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRA--VTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTT--NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVI 616
            ASDP PLQD C+  ++ P +   +NG  CK    V                        VT  +V   P +NT G+SL RID G+ G NPPHTHPRATE  +V +G + VGF ++   N  F+K L  G VF+ P   +HFQ+N+GK  A      +SQNPGV     TLF + P +  +VL K+F +   VI
Sbjct:   24 ASDPSPLQDFCIG-VNTPANALFVNGKFCKDPKLVTADDFYFSGLDKARTTESSPVGSNVTTVNVNQIPGLNTLGISLVRIDYGINGQNPPHTHPRATEILLVQEGTLFVGFFSSFPENRLFNKTLNKGDVFVFPEGLIHFQVNIGKQPAVAFASLSSQNPGVIIIGNTLFGSKPPIDPNVLAKAFQLDPKVI 215          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.534e-27
Identity = 74/195 (37.95%), Postives = 101/195 (51.79%), Query Frame = 2
Query:   59 ASDPDPLQDICVAD-LDAPISINGF----PCKPASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIR 628
            ASDPDP+QD C+   + +P   + F    PCK +SEV                     A        FP +NT G+S  R DL  G INPPH HPRATE   ++KGRV  GFV +NN  ++KV+  G + + P+  VHFQ+NVG   AT V   NSQNPG+      +F +   +   +L K+F +S   I  ++
Sbjct:   24 ASDPDPIQDFCIPKPVTSPYHDHHFSTNLPCKNSSEVTTEDFVFSGLKTAGNFTETGFATVPVGPENFPGLNTLGISFVRADLKPGSINPPHYHPRATEVAHLVKGRVYSGFVDSNNKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVVFGS--GINEELLMKAFGLSLKQIGTLK 216          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.534e-27
Identity = 74/197 (37.56%), Postives = 105/197 (53.30%), Query Frame = 2
Query:   56 HASDPDPLQDICVADLDAP-ISINGFPCKPASEVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN---NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            +A DP PLQD CVA  D   + +NG  CK    V                       VT  +V   P +NT G+SL RID    G NPPHTHPR +E  ++++G + VGFV++N   N  F+KVL PG VF+ P   +HFQLN+GK  A      +SQN GV     T+F +NP +   +L ++F +  +V+  +++
Sbjct:   21 NAYDPSPLQDFCVAIDDLKGVFVNGRFCKDPERVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDANVVKELQA 217          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.028e-27
Identity = 74/197 (37.56%), Postives = 104/197 (52.79%), Query Frame = 2
Query:   56 HASDPDPLQDICVADLDAP-ISINGFPCKPASEVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN---NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            +A DP PLQD CVA  D   + +NG  CK    V                       VT  +V   P +NT G+SL RID    G NPPHTHPR +E  ++++G + VGFV++N   N  F+KVL PG VF+ P   +HFQ+NVGK  A      +SQN GV     T+F +NP +   +L ++F +   V+  +++
Sbjct:   21 NAYDPSPLQDFCVAIDDLKGVFVNGRFCKDPKRVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQA 217          
The following BLAST results are available for this feature:
BLAST of DC900280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL110_ARATH6.440e-2940.84Germin-like protein subfamily 1 member 10 OS=Arabi... [more]
GL19_ARATH1.874e-2841.24Putative germin-like protein subfamily 1 member 9 ... [more]
GL113_ARATH1.874e-2837.19Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
GL25_ARATH2.447e-2836.22Probable germin-like protein subfamily 2 member 5 ... [more]
GL115_ARATH4.175e-2838.38Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL117_ARATH1.215e-2737.88Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GL112_ARATH2.072e-2739.38Putative germin-like protein subfamily 1 member 12... [more]
GL32_ARATH3.534e-2737.95Germin-like protein subfamily 3 member 2 OS=Arabid... [more]
GL116_ARATH3.534e-2737.56Germin-like protein subfamily 1 member 16 OS=Arabi... [more]
GL120_ARATH6.028e-2737.56Germin-like protein subfamily 1 member 20 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionDC900280 VSS Citrus sinensis cDNA clone VS28627 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900280 ID=DC900280; Name=DC900280; organism=Citrus sinensis; type=EST; length=791bp
ATCAATGTCACTCTTCGGGCTGCTACTAGTGTTAGTGATTCTACCCTTCC
CTTCCCACGCAAGTGACCCTGATCCCTTACAAGACATCTGTGTTGCGGAT
TTGGATGCCCCCATCTCGATCAATGGTTTCCCGTGCAAGCCTGCTTCGGA
AGTGACTTCTGATGATTTCTTCACGGATTTTTCCAAGGATCCGACGACAT
TCGATGTCTTTAAGCGTGCAGTTACATTTGGTGATGTGTTTGGCTTTCCA
GCGGTCAACACTCAAGGAGTTTCACTCTTCCGAATTGACCTGGGTGTCGG
CGGAATAAATCCGCCTCACACGCATCCTCGCGCAACTGAGGCTGGTATTG
TTCTTAAAGGGAGGGTGCTTGTGGGATTTGTAACAACTAATAATACCTTT
TTCTCAAAGGTTTTGACTCCCGGGATGGTGTTCTTAATTCCTAGAGCACA
TGTCCATTTCCAATTAAACGTTGGAAAAGGAAAGGCTACTTTCGTGCCCA
TTTTCAACAGTCAAAATCCCGGCGTTTCGGATTCAGTCGGTACTCTGTTT
GATACTAATCCCTCAGTTCCCAATAGTGTGTTGACCAAATCTTTCCTAGT
AAGTGATGATGTGATCAATGCCATCAGATCGGCTCGAACGTCAAATAAGT
CTGGCCATCAATTCAACACCCGGTCTAGCTATTAGCATTCTCCATGCTTG
ATCGATATCTTTTATTGTCTCAAAATTGTTAGATTTATTTTATCTAGCAA
TTGTTAAATAAAATTACAGCTGAGGCAATATATAACTATCG
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