DC900280

Overview
NameDC900280
Unique NameDC900280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL119_ARATH (Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana GN=At5g39180 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.028e-27
Identity = 74/198 (37.37%), Postives = 105/198 (53.03%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAP---ISINGFPCK-PASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTT---NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            A DP PLQD CVA +D P   + +NG  CK P                       +  VT  +V   P +NT G+SL RID    G NPPHTHPRATE  ++++G + VGFV++   NN  F+KVL PG VF+ P   +HFQ+N+GK  A      +SQN GV      +F + P +   +L ++F +  +V+  + +
Sbjct:   21 AYDPSPLQDFCVA-IDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADIVFGSTPPINPDILAQAFQLDVNVVKDLEA 217          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 6.028e-27
Identity = 74/197 (37.56%), Postives = 104/197 (52.79%), Query Frame = 2
Query:   56 HASDPDPLQDICVADLDAP-ISINGFPCKPASEVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN---NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            +A DP PLQD CVA  D   + +NG  CK    V                       VT  +V   P +NT G+SL RID    G NPPHTHPR +E  ++++G + VGFV++N   N  F+KVL PG VF+ P   +HFQ+NVGK  A      +SQN GV     T+F +NP +   +L ++F +   V+  +++
Sbjct:   21 NAYDPSPLQDFCVAIDDLKGVFVNGRFCKDPKRVDAKDFFFSGLNMPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQA 217          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL13_ARATH (Germin-like protein subfamily 1 member 3 OS=Arabidopsis thaliana GN=At3g04170 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.028e-26
Identity = 71/192 (36.98%), Postives = 101/192 (52.60%), Query Frame = 2
Query:   65 DPDPLQDICVADLDAP-ISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNN---TFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIR 628
            DP PLQD CVA  +   + +NG  CK    V                   KR  +F +    P +NT GV + RID   GG+ PPH HPRA+E  +V+KG++LVGFV++N+   T FSK+L PG VF+ P   V F  N+GK  A  +    SQNPG       +F + P +   +L K+F +  +++  +R
Sbjct:   26 DPSPLQDYCVAVPEKNGVFVNGEFCKDPKLVTSDDFFASGLNIPGNTN--KRLGSFVNPANIPGLNTLGVGIARIDFAPGGLIPPHIHPRASEIILVIKGKLLVGFVSSNDYNYTLFSKILYPGDVFVHPIGLVQFHANIGKTNAVAIGAVGSQNPGYISVGDAVFGSKPPIDPKILAKAFALDINIVRYLR 215          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL18_ARATH (Germin-like protein subfamily 1 member 8 OS=Arabidopsis thaliana GN=GLP9 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.343e-26
Identity = 75/198 (37.88%), Postives = 103/198 (52.02%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAP---ISINGFPCK-PASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN---NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            ASDP PLQD CV  ++ P   + +NG  CK P                          VT  +V     +NT G+SL RID    G NPPHTHPRATE  +V +G +LVGF+++N   N  F+K L  G VF+ P   +HFQ N+G   A  +   +SQN GV     T+F + P V  +VL ++F +    +NA+R+
Sbjct:   24 ASDPSPLQDFCVG-VNTPADGVFVNGKFCKDPRIVFADDFFFSSLNRPGNTNNAVGSNVTTVNVNNLGGLNTLGISLVRIDYAPNGQNPPHTHPRATEILVVQQGTLLVGFISSNQDGNRLFAKTLNVGDVFVFPEGLIHFQFNLGGTPAVAIAALSSQNAGVITIANTIFGSKPDVDPNVLARAFQMD---VNAVRN 217          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.665e-26
Identity = 72/184 (39.13%), Postives = 91/184 (49.46%), Query Frame = 2
Query:   65 DPDPLQDICVADLDA--PISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVF----GFPAVNTQGVSLFRIDLGV-GGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSF 595
            DPD +QD CV D     P+ +   P  P                      F     F  V      FP ++T G+S  R DL   GG+NPPH HPRATE  +VL GRV  GFV +    F+KVL  G V + PRA VHFQLNVG   AT    FNS+NPG+     T+F +   +  +VL ++F
Sbjct:   24 DPDAVQDFCVPDAGRGRPVELAMLPAYPCRSPANLTAGDFAFSGVRAAGNFSPETGFAGVSVTPAQFPGLHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDSGGRLFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVFGS--GIREAVLERAF 205          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL12_ARATH (Putative germin-like protein subfamily 1 member 2 OS=Arabidopsis thaliana GN=At3g04150 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.665e-26
Identity = 71/201 (35.32%), Postives = 104/201 (51.74%), Query Frame = 2
Query:   56 HASDPDPLQDICVADLDAP-ISINGFPCK-PASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNN---TFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRSARTS 643
            H  DP+PLQD CVA      + +NG  CK P                         +VT  DV   P +NT G+++ R+D   GG  PPH HPRA++  +VLKG++ VGFV++N+   T FSK+L PG VF  P   V F  N GK  A  + +  SQ+PGV      +F +NP +   +L K+F +  +++  ++   +S
Sbjct:   23 HCYDPNPLQDYCVATNGTNRVFVNGKFCKDPKLVTANDFFYSGLNIPGNTSNRLGASVTDVDVRRIPGLNTLGIAIARLDFAPGGQLPPHIHPRASQIILVLKGQLSVGFVSSNDYNYTLFSKILYPGDVFAFPIGLVQFHANTGKTHAVAIGVVGSQDPGVIPIGDAVFGSNPLIDPKLLAKAFALDVNIVRHVQRVFSS 223          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL14_ARATH (Germin-like protein subfamily 1 member 4 OS=Arabidopsis thaliana GN=At3g04180 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.939e-25
Identity = 67/194 (34.54%), Postives = 101/194 (52.06%), Query Frame = 2
Query:   65 DPDPLQDICVADLDAP-ISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRAV-TFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNN---TFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            DP PLQD CVA  +   + +NG  CK    V                 +   A  T  DV   P +NT GV + R D   GG++PPHTHPR ++  +V+KG++ VGFV++N    T F+KVL PG VF+ P+  +HF  N+G+  A  +    SQ+PG       +F + P +   VL K+F +  + +  +++
Sbjct:   26 DPSPLQDYCVATNETNGVYVNGEFCKDPKRVTTNDFYTSGLNVPGNTIIGPGARNTVVDVERLPGLNTLGVDIARYDFAPGGLDPPHTHPRGSQIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIHFHANIGETNAVVISAGGSQDPGRIIIGDAVFGSKPLIDPKVLAKAFALDYNKVKYLQA 219          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL15_ARATH (Germin-like protein subfamily 1 member 5 OS=Arabidopsis thaliana GN=At3g04190 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.308e-25
Identity = 68/182 (37.36%), Postives = 93/182 (51.10%), Query Frame = 2
Query:   65 DPDPLQDICVADLDAP-ISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRA-VTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNN---TFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSF 595
            +P PLQD CVA  +   + +NG  CK    V                       +T  DV   P +NT GV + RID   GG+ PPHTHPR +E  +V+KG++ VGFV++N    T F+KVL PG VF+ P+  + F  N+GK  A  +    SQNPG       +F + P +   VL K+F
Sbjct:   26 EPSPLQDYCVATNETNGVYVNGKFCKDPKCVTANDFYTSGLNVPGNTSTGPGVKITVVDVKRMPGLNTLGVDIARIDFAPGGLYPPHTHPRGSEIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIQFHANIGKTNAVVIAATGSQNPGRIIIGNAVFGSKPLIDPKVLAKAF 207          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.369e-25
Identity = 73/212 (34.43%), Postives = 101/212 (47.64%), Query Frame = 2
Query:   53 SHASDPDPLQDICVADLDAP---ISINGFPCKPASEVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTN-----NTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFD----------TNPSVPNSVLTKSFLVSDDVINAIRS 631
            ++A+DP  LQD CV  ++ P   + +NG  CK   EV                      A T       P +NT G+S+ R+D    G+NPPHTHPRATE  +VL+G   VGFVT+N     N  F+KVL  G VF+ P+  +HFQLN+G      +   +SQNPGV      +F             PS+   + +  F +   V+ A  S
Sbjct:   20 AYATDPTQLQDFCVG-VNKPNDGLFVNGLFCKDPMEVNPDDFLFRGLNMPANTDNALGFAATLVTAANLPGLNTLGISVARLDFAPHGLNPPHTHPRATEVFVVLEGTFYVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVFGPEHLSQLMFLLRPSISMRIWSSFFRIGSQVVAATTS 230          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.776e-24
Identity = 70/200 (35.00%), Postives = 98/200 (49.00%), Query Frame = 2
Query:   59 ASDPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGF-------PAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTT--NNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            A DP+PLQD CVAD  + + +NG PCK  + V                    R  T    +GF       P +NT G S  R+D+  GG+ PPH HPRA+E  +VL G V  GFVT+  ++   +KVL  G VF +P+  VHF  N G   A      +SQNPG+      L      +P  ++ K+ L  +  ++ IR+
Sbjct:   28 AFDPNPLQDFCVADPTSKVRVNGLPCKDPAAVTADDFFFSGVGEPAAGG--GRGATASRRYGFTARSVDIPGLNTLGASAARVDVAPGGVFPPHYHPRASETAVVLAGAVYFGFVTSYPDSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEPAALYASLSSQNPGLVLVADALLAA--PLPVDLVAKTLLTDEATVDKIRA 223          
The following BLAST results are available for this feature:
BLAST of DC900280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL119_ARATH6.028e-2737.37Germin-like protein subfamily 1 member 19 OS=Arabi... [more]
GL118_ARATH6.028e-2737.56Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL13_ARATH1.028e-2636.98Germin-like protein subfamily 1 member 3 OS=Arabid... [more]
GL18_ARATH1.343e-2637.88Germin-like protein subfamily 1 member 8 OS=Arabid... [more]
GL24_ORYSJ6.665e-2639.13Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
GL12_ARATH6.665e-2635.32Putative germin-like protein subfamily 1 member 2 ... [more]
GL14_ARATH1.939e-2534.54Germin-like protein subfamily 1 member 4 OS=Arabid... [more]
GL15_ARATH3.308e-2537.36Germin-like protein subfamily 1 member 5 OS=Arabid... [more]
GLP1_MESCR7.369e-2534.43Germin-like protein OS=Mesembryanthemum crystallin... [more]
GL51_ORYSJ4.776e-2435.00Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionDC900280 VSS Citrus sinensis cDNA clone VS28627 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900280 ID=DC900280; Name=DC900280; organism=Citrus sinensis; type=EST; length=791bp
ATCAATGTCACTCTTCGGGCTGCTACTAGTGTTAGTGATTCTACCCTTCC
CTTCCCACGCAAGTGACCCTGATCCCTTACAAGACATCTGTGTTGCGGAT
TTGGATGCCCCCATCTCGATCAATGGTTTCCCGTGCAAGCCTGCTTCGGA
AGTGACTTCTGATGATTTCTTCACGGATTTTTCCAAGGATCCGACGACAT
TCGATGTCTTTAAGCGTGCAGTTACATTTGGTGATGTGTTTGGCTTTCCA
GCGGTCAACACTCAAGGAGTTTCACTCTTCCGAATTGACCTGGGTGTCGG
CGGAATAAATCCGCCTCACACGCATCCTCGCGCAACTGAGGCTGGTATTG
TTCTTAAAGGGAGGGTGCTTGTGGGATTTGTAACAACTAATAATACCTTT
TTCTCAAAGGTTTTGACTCCCGGGATGGTGTTCTTAATTCCTAGAGCACA
TGTCCATTTCCAATTAAACGTTGGAAAAGGAAAGGCTACTTTCGTGCCCA
TTTTCAACAGTCAAAATCCCGGCGTTTCGGATTCAGTCGGTACTCTGTTT
GATACTAATCCCTCAGTTCCCAATAGTGTGTTGACCAAATCTTTCCTAGT
AAGTGATGATGTGATCAATGCCATCAGATCGGCTCGAACGTCAAATAAGT
CTGGCCATCAATTCAACACCCGGTCTAGCTATTAGCATTCTCCATGCTTG
ATCGATATCTTTTATTGTCTCAAAATTGTTAGATTTATTTTATCTAGCAA
TTGTTAAATAAAATTACAGCTGAGGCAATATATAACTATCG
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