DC900280

Overview
NameDC900280
Unique NameDC900280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: AB19B_PRUPE (Auxin-binding protein ABP19b OS=Prunus persica GN=ABP19B PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.238e-24
Identity = 64/159 (40.25%), Postives = 87/159 (54.72%), Query Frame = 2
Query:   53 SHASDPDPLQDICVADLDAPISINGFPCK-PASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGV 526
            SHAS    +QD CVAD  AP    G+ CK PA                    +FK AVT      FP VN  G+SL R+DLG GG+ P HTHP A+E  +V++G ++ GFV ++NT + K L  G + + P+  +HFQ+N G   A   P F+S +PG+
Sbjct:   16 SHAS----VQDFCVADYKAPDGPAGYSCKKPAIVTVNDFVYSGLGIAGNTTNIFKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVVPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIIVFPQGLLHFQVNGGDTPAIAFPSFSSPSPGL 170          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.370e-23
Identity = 63/159 (39.62%), Postives = 86/159 (54.09%), Query Frame = 2
Query:   53 SHASDPDPLQDICVADLDAPISINGFPCK-PASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGV 526
            SHAS    +QD CVAD  AP    G+ CK PA                    + K AVT      FP VN  G+SL R+DLG GG+ P HTHP A+E  +V++G ++ GFV ++NT + K L  G + + P+  +HFQ+N G   A   P F+S +PG+
Sbjct:   16 SHAS----VQDFCVADYKAPDGPAGYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGL 170          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.281e-23
Identity = 68/200 (34.00%), Postives = 97/200 (48.50%), Query Frame = 2
Query:   65 DPDPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGF-----------PAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVG-KGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIR 628
            DPD L D CVAD  A  +   F     + +                     A T   ++GF           P  N QG+++ RIDL  GG+ PPH+HPRA+EA +VL G VLVGF  T+   ++++L  G  F+ PRA VHF  N+     A  +   NSQ+PG      + F T P +P+ VL K+F ++   +  I+
Sbjct:   23 DPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAAT---LYGFNATLTSPAASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQDVQRIQ 219          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.281e-23
Identity = 65/173 (37.57%), Postives = 91/173 (52.60%), Query Frame = 2
Query:   77 LQDICVADLDAPISINGFPCK-PASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKS 592
            +QD CVADL AP    GF CK PAS                   + K AVT   V  FP VN  G+S+ R+DL VGG+ P HTHP A+E  IV +G +  GFV ++NT + + L  G + + P+  +HFQ+N G+  A     F S +PG+      LF  +  +P  V+ ++
Sbjct:   25 VQDFCVADLAAPEGPAGFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASDNTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALFKND--LPTEVIAQT 195          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.007e-22
Identity = 63/185 (34.05%), Postives = 97/185 (52.43%), Query Frame = 2
Query:   80 QDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVT-TNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRS 631
            QD CVADL    +  G+PCK AS                   + K AVT   V  FP VN  G+S  R+D+ VGG+ P HTHP A+E   V +G V  GF+T ++NT +++ L  G + + P+  +H+Q N G+  A  +  F+  NPG+  +   LF  N  +P++++ K   + D  +  ++S
Sbjct:   26 QDFCVADLTCSDTPAGYPCK-ASVGAGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSSSNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGLQITDYALFANN--LPSAIVEKVTFLDDAQVKKLKS 207          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.423e-22
Identity = 62/185 (33.51%), Postives = 87/185 (47.03%), Query Frame = 2
Query:   62 SDPDPLQDIC--VADLDAPISINGFPCK-PASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSD 607
            SD  PLQD+C      +  + +NGF CK P++ +                 + + +        FP +NT G+S+ R D+ V G   PH+HPRA+E   V  G V+ GF  T    F K L  G VF+ PR  VHF +N G G AT   + NSQNPGV      +F  +  V   ++ +     D
Sbjct:   23 SDSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGKLFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFAPDSEVAEGLMARMLSFRD 207          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.301e-21
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2
Query:   71 DPLQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGV 526
            D +QD CVA+L    +  G+PC     V                 +   AVT G V  FPA+N  G+S  R+DL   G+ P HTHP A+E   VL G +  GF+++ N+ + + L PG V + P+  +HFQ+N GK  A  +  F+S +PG+
Sbjct:   17 DSVQDFCVANLKRAETPAGYPCIRPIHVKASDFVFSLGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISSANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPGL 168          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.455e-21
Identity = 60/185 (32.43%), Postives = 93/185 (50.27%), Query Frame = 2
Query:   77 LQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIR 628
            +QD CVAD   P S +G+ CK   +V                  + K AVT      +  +N  GVSL R+DL  GG+ P HTHP A+E  +V++G +  GF+++ N  + K L  G   + P+  +HFQLN GKG A     F S +PG+      LF  +  +P+ ++  +  +SD  +  ++
Sbjct:   22 VQDFCVADPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFAND--LPSELVEATTFLSDAEVKKLK 204          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 8.431e-21
Identity = 65/197 (32.99%), Postives = 95/197 (48.22%), Query Frame = 2
Query:   62 SDPDPLQDICVADLDAP---ISINGFPCKPASE--VXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGK-GKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIRSA 634
            SDPDPLQD CV+   +    I +NG  CK  ++  V                  F   VT       P +NT G+++ R+D G  G+ PPH HPRA+E  + L G +LVGFV T+   F++ L PG  F+ P+  +HF  N+     A  V   +SQNPG      + F + P     VL  ++ ++   +  IR +
Sbjct:   18 SDPDPLQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSFISKPPFLVEVLKSAYDINGQDVARIRKS 214          
BLAST of DC900280 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.438e-20
Identity = 60/185 (32.43%), Postives = 94/185 (50.81%), Query Frame = 2
Query:   77 LQDICVADLDAPISINGFPCKPASEVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRIDLGVGGINPPHTHPRATEAGIVLKGRVLVGFVTTNNTFFSKVLTPGMVFLIPRAHVHFQLNVGKGKATFVPIFNSQNPGVSDSVGTLFDTNPSVPNSVLTKSFLVSDDVINAIR 628
            +QD CVAD   P + +G+ CK   +V                  V K AVT      F  +N   VSL R+DL  GG+ P HTHP A+E  +V++G +  GF+++ N  + K L+ G   + P+  +HFQLN GKG A     F S +PG+      LF  +  +P+ ++  +  +SD+ +  ++
Sbjct:   22 VQDFCVADPKGPQNPSGYSCKNPDQVTENDFAFSGLGKAGNTSNVIKAAVTPAFAPAFAGLNGLDVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFAND--LPSELVEATTFLSDEEVKKLK 204          
The following BLAST results are available for this feature:
BLAST of DC900280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
AB19B_PRUPE6.238e-2440.25Auxin-binding protein ABP19b OS=Prunus persica GN=... [more]
AB19A_PRUPE2.370e-2339.62Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GL31_ORYSJ5.281e-2334.00Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
ABP20_PRUPE5.281e-2337.57Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GL814_ORYSJ2.007e-2234.05Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GL111_ORYSJ3.423e-2233.51Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GLP1_BRANA1.301e-2136.18Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL33_ARATH6.455e-2132.43Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GL11_ARATH8.431e-2132.99Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GLP1_SINAL1.438e-2032.43Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionDC900280 VSS Citrus sinensis cDNA clone VS28627 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900280 ID=DC900280; Name=DC900280; organism=Citrus sinensis; type=EST; length=791bp
ATCAATGTCACTCTTCGGGCTGCTACTAGTGTTAGTGATTCTACCCTTCC
CTTCCCACGCAAGTGACCCTGATCCCTTACAAGACATCTGTGTTGCGGAT
TTGGATGCCCCCATCTCGATCAATGGTTTCCCGTGCAAGCCTGCTTCGGA
AGTGACTTCTGATGATTTCTTCACGGATTTTTCCAAGGATCCGACGACAT
TCGATGTCTTTAAGCGTGCAGTTACATTTGGTGATGTGTTTGGCTTTCCA
GCGGTCAACACTCAAGGAGTTTCACTCTTCCGAATTGACCTGGGTGTCGG
CGGAATAAATCCGCCTCACACGCATCCTCGCGCAACTGAGGCTGGTATTG
TTCTTAAAGGGAGGGTGCTTGTGGGATTTGTAACAACTAATAATACCTTT
TTCTCAAAGGTTTTGACTCCCGGGATGGTGTTCTTAATTCCTAGAGCACA
TGTCCATTTCCAATTAAACGTTGGAAAAGGAAAGGCTACTTTCGTGCCCA
TTTTCAACAGTCAAAATCCCGGCGTTTCGGATTCAGTCGGTACTCTGTTT
GATACTAATCCCTCAGTTCCCAATAGTGTGTTGACCAAATCTTTCCTAGT
AAGTGATGATGTGATCAATGCCATCAGATCGGCTCGAACGTCAAATAAGT
CTGGCCATCAATTCAACACCCGGTCTAGCTATTAGCATTCTCCATGCTTG
ATCGATATCTTTTATTGTCTCAAAATTGTTAGATTTATTTTATCTAGCAA
TTGTTAAATAAAATTACAGCTGAGGCAATATATAACTATCG
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