CX043592

Overview
NameCX043592
Unique NameCX043592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL4_ORYSI (Beta-galactosidase 4 OS=Oryza sativa subsp. indica GN=OsI_006270 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = -2
Query:  542 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT 703
            GTY E KCR+ CG  SQRWYHVPRSWLKP GNLLVV EE+GG+   +SL  RTT
Sbjct:  676 GTYHEDKCRSNCGDLSQRWYHVPRSWLKPGGNLLVVLEEYGGDLAGVSLATRTT 729          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL9_ORYSJ (Beta-galactosidase 9 OS=Oryza sativa subsp. japonica GN=Os06g0573600 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.793e-16
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = -2
Query:  542 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT 703
            GTY+EKKC+  CG  SQRWYHVPRSWL PSGNL+V+ EE+GG+   ++L+ RTT
Sbjct:  662 GTYSEKKCQANCGDASQRWYHVPRSWLNPSGNLVVLLEEFGGDLSGVTLMTRTT 715          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL5_ARATH (Beta-galactosidase 5 OS=Arabidopsis thaliana GN=BGAL5 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 34/53 (64.15%), Postives = 45/53 (84.91%), Query Frame = -2
Query:  545 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRT 703
            GTY + KC++ CG+P+QRWYHVPRSWLKP GNLLV+FEE GG+   +S++KR+
Sbjct:  678 GTYRQNKCQSGCGEPTQRWYHVPRSWLKPKGNLLVLFEELGGDISKVSVVKRS 730          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL3_ORYSJ (Beta-galactosidase 3 OS=Oryza sativa subsp. japonica GN=Os01g0875500 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = -2
Query:  545 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRT 703
            GT++  KCR  CG+P+QRWYHVPRSW  PSGN LV+FEE GG+P  I+  +RT
Sbjct:  685 GTFSPNKCRRGCGQPTQRWYHVPRSWFHPSGNTLVIFEEKGGDPTKITFSRRT 737          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL4_ARATH (Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BGAL4 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = -2
Query:  545 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRT 703
            GT+  KKC + CG+ SQRWYHVPRSWLK S NL+VVFEE GG+P+ ISL+KRT
Sbjct:  673 GTFDAKKCLSNCGEASQRWYHVPRSWLK-SQNLIVVFEELGGDPNGISLVKRT 724          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL5_ORYSJ (Beta-galactosidase 5 OS=Oryza sativa subsp. japonica GN=Os03g0165400 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = -2
Query:  545 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRT 703
            G+Y   KC+  CG+P+QRWYHVPRSWL+P+ NLLVVFEE GG+   I+L KRT
Sbjct:  673 GSYRAPKCQAGCGQPTQRWYHVPRSWLQPTRNLLVVFEELGGDSSKIALAKRT 725          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL8_ARATH (Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = -2
Query:  542 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT 703
            G+Y   KC   CGKPSQ  YHVPRSWLKPSGN+LV+FEE GG+P  IS   + T
Sbjct:  684 GSYRANKCLKNCGKPSQTLYHVPRSWLKPSGNILVLFEEMGGDPTQISFATKQT 737          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGA15_ORYSJ (Beta-galactosidase 15 OS=Oryza sativa subsp. japonica GN=Os12g0429200 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = -2
Query:  557 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISL 703
            G Y E+KC++ CG P+Q WYH+PR WLK S NLLV+FEE GG+P  ISL
Sbjct:  740 GAYNERKCQSNCGMPTQNWYHIPREWLKESDNLLVLFEETGGDPSLISL 788          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGA10_ARATH (Beta-galactosidase 10 OS=Arabidopsis thaliana GN=BGAL10 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 34/52 (65.38%), Postives = 37/52 (71.15%), Query Frame = -2
Query:  548 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKR 703
            G +   KC T CG+PSQRWYHVPRSW K SGN LV+FEE GG P  I L KR
Sbjct:  685 GKFMPDKCLTGCGEPSQRWYHVPRSWFKSSGNELVIFEEKGGNPMKIKLSKR 736          
BLAST of CX043592 vs. ExPASy Swiss-Prot
Match: BGAL9_ARATH (Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = -2
Query:  557 GTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISL 703
            G Y   KC T CGKP+Q  YHVPRSWLKPS NLLV+FEE GG P  IS+
Sbjct:  707 GAYNSDKCTTNCGKPTQTRYHVPRSWLKPSSNLLVLFEETGGNPFKISV 755          
The following BLAST results are available for this feature:
BLAST of CX043592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
BGAL4_ORYSI6.733e-1670.37Beta-galactosidase 4 OS=Oryza sativa subsp. indica... [more]
BGAL9_ORYSJ8.793e-1664.81Beta-galactosidase 9 OS=Oryza sativa subsp. japoni... [more]
BGAL5_ARATH1.148e-1564.15Beta-galactosidase 5 OS=Arabidopsis thaliana GN=BG... [more]
BGAL3_ORYSJ1.270e-1462.26Beta-galactosidase 3 OS=Oryza sativa subsp. japoni... [more]
BGAL4_ARATH1.658e-1469.81Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BG... [more]
BGAL5_ORYSJ2.829e-1464.15Beta-galactosidase 5 OS=Oryza sativa subsp. japoni... [more]
BGAL8_ARATH1.404e-1362.96Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BG... [more]
BGA15_ORYSJ1.404e-1363.27Beta-galactosidase 15 OS=Oryza sativa subsp. japon... [more]
BGA10_ARATH3.127e-1365.38Beta-galactosidase 10 OS=Arabidopsis thaliana GN=B... [more]
BGAL9_ARATH9.099e-1367.35Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BG... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12B07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12B07-C14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043592 ID=CX043592; Name=CX043592; organism=Citrus sinensis; type=EST; length=704bp
TTTTTTTTTTTTTTTTTATTCAATTGTTTTCACTTTATTGCATCGGGAAT
ACAAAGTTCTTCAAATGAGCTCATTCACATGGAGGCGTATGGCAGCAACA
CTCAAAGCAAATTCGGAACTTAAATGCAATTCAAAAGCTGCTATCTATTA
CTTTCCCACTTATTTTTAAATGACAAGGAAATAAAAGATTTCCACTATAA
ACTTGTAGTTGATGAAGAGTGAAACCCAGCGAGCCTACATGAATGTTTGA
GGAACTAACACTTTTGCCTATTTGACTGAATGACCTTTAAGTATGCTTGC
AGAGCTATATTGACAAATATATAGCTTGACTATGACTATGTACATACAAC
AAGGAGCATCCTTGCAACAACTTCACAATCTATACTTCTTGGCTTTGGCC
AGATTATGGGTATGGTTGGACACTTTGGTTTGCCCGTTTGTCGGAGTCAA
ACCATCATCACCTTAGCAAATGAGGGAAGCGTATGCTTGAATTATTGAAG
AATGAGAAAAAGAAAAAGAAAATAATTGTCGTAGCTGTTTATGTTGTTCT
CTTGAGCAAAGAGATCCAATGTGGTTCACCGCCCCATTCTTCAAACACAA
CCAACAGGTTTCCACTCGGCTTCAGCCATGAGCGGGGAACGTGATACCAT
CGTTGAGAGGGCTTTCCGCAGTAAGTTCGGCATTTCTTCTCGGTGTAAGT
TCCA
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