CX043586

Overview
NameCX043586
Unique NameCX043586
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3584 contig Csv1_Contig3584:1..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12
Identity = 50/180 (27.78%), Postives = 93/180 (51.67%), Query Frame = 2
Query:  260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 793
            D +S +EE   +A    +YV N+  ++   E  E+F PFG + S+ + ++ E G S+G G++      +A  A+  L+  ++ G+++ V  +     RT   +      +  K+  Y+  + L+V NL   +  E L   F  FGT+ S++V+ D  G+ ++ FGF+ FS+  E   A++
Sbjct:  235 DRESKLEE--MKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVN-LFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGK-SKGFGFVCFSTPEEATKAIT 409          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12
Identity = 52/173 (30.06%), Postives = 92/173 (53.18%), Query Frame = 2
Query:  311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTI 826
            +++ NL  + D   L + F  FG +LS +V+++ E G S+G G++   +  +A  AI  ++G  +  +++ V   I    R    E +    K  F       +YV N++  V  E+ R  F +FG V S+ +  D++G+ +R FGF++F++ +A   A   LNG DFRG+ +
Sbjct:  150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGK-SRGFGFVNFTTHEAAAQAVDELNGKDFRGQDL 311          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12
Identity = 52/174 (29.89%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 826
            +Y+ N     D   L ++F  FG  LSV+V  + E+G S+G G+++      A+ A+  ++G ++ G+++ V  +     R    +      K  +I  Y+  + LYV NL   +  E LR  F  FGT+ SA+V+   +G  ++ FGF+ FSS  E   A+    T+  GR +
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV----TEMNGRIV 358          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12
Identity = 52/174 (29.89%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 826
            +Y+ N     D   L ++F  FG  LSV+V  + E+G S+G G+++      A+ A+  ++G ++ G+++ V  +     R    +      K  +I  Y+  + LYV NL   +  E LR  F  FGT+ SA+V+   +G  ++ FGF+ FSS  E   A+    T+  GR +
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV----TEMNGRIV 358          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12
Identity = 52/174 (29.89%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 826
            +Y+ N     D   L ++F  FG  LSV+V  + E+G S+G G+++      A+ A+  ++G ++ G+++ V  +     R    +      K  +I  Y+  + LYV NL   +  E LR  F  FGT+ SA+V+   +G  ++ FGF+ FSS  E   A+    T+  GR +
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV----TEMNGRIV 358          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.562e-12
Identity = 54/176 (30.68%), Postives = 92/176 (52.27%), Query Frame = 2
Query:  311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 826
            +YV NLP   D   L ++F  FG +LSV+V R+  +G SR  G++       A+ A++ ++G +V GR +   R +  ++  N   R  E +     ++  Y+  + LYV NL  ++  + LR  F  +G + SA+V+   +G  ++ FGF+ FSS  E   A+    T+  GR +
Sbjct:  193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQM--KQDRLRRYQGVN-LYVKNLDDSIDDDKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.959e-12
Identity = 52/192 (27.08%), Postives = 97/192 (50.52%), Query Frame = 2
Query:  260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTI 826
            D +S  EE   +A    +YV N+   +   +L ++F P+G + S+ + ++ E G S+G G++      +A  A+  L+  ++ G+++ V  +     R    +      +  K+  Y+  + L++ NL   +  E L   F  FGT+ SARV+ D  G+ ++ FGF+ FSS  E   A++ +N   F G+ +
Sbjct:  220 DRESKFEE--IKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAE-GKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVN-LFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGK-SKGFGFVCFSSPEEATKAITEMNQRMFFGKPL 406          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.782e-12
Identity = 50/173 (28.90%), Postives = 90/173 (52.02%), Query Frame = 2
Query:  311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 826
            +++ NL  + D   L + F  FG +LS +V+++ E G S+G G++   +  +A+NAI  ++G  +  +++ V   I    R    E +    K  F       +YV N+      E+ R+ F +FG + SA +  D +   +R FGF++F+S     AA+ +LN  DF+G+ +
Sbjct:  145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKL 307          

HSP 2 Score: 68.9366 bits (167), Expect = 3.862e-11
Identity = 51/177 (28.81%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 784
            D  S  EE   +A    +YV N+ +     E  ++F+ FG + S  ++R+ E+G SRG G++   S ++A  A+ AL+  D  G+++ V  +   + R           +  K   Y+  + LY+ NLS  +  E LR  F  +GT+ SA+V+ D   ++T         SD+E++A
Sbjct:  223 DRQSKFEE--MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVN-LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPEST---------SDSEKEA 387          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.782e-12
Identity = 52/174 (29.89%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 826
            +Y+ N     D   L ++F  FG  LSV+V  + E+G S+G G+++      A+ A+  ++G ++ G+++ V  +     R    +      K  +I  Y+  + LYV NL   +  E LR  F  FGT+ SA+V+   +G  ++ FGF+ FSS  E   A+    T+  GR +
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV----TEMNGRIV 358          
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11
Identity = 52/176 (29.55%), Postives = 89/176 (50.57%), Query Frame = 2
Query:  311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 826
            +Y+ N     D   L E+F  FG  LSV+V R+P  G S+G G+++      A  A+  ++G ++ G+ +   R +  ++  +   R  E L    ++I  Y+  + LY+ NL   +  E LR  F  FG++ SA+V+   +   ++ FGF+ FSS  E   A+    T+  GR +
Sbjct:  193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAV----TEMNGRIV 358          
The following BLAST results are available for this feature:
BLAST of CX043586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
PABP_LODEL2.048e-1227.78Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEUCR3.493e-1230.06Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP1_PONAB3.493e-1229.89Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP1_HUMAN3.493e-1229.89Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN3.493e-1229.89Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
PAP1L_HUMAN4.562e-1230.68Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
PABP_PICST5.959e-1227.08Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_COCIM7.782e-1228.90Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_HUMAN7.782e-1229.89Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
PABP4_HUMAN1.734e-1129.55Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12B04_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12B04-C8-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043586 ID=CX043586; Name=CX043586; organism=Citrus sinensis; type=EST; length=831bp
CTTCTCAATGGCTGCCGCTACGGGCTTCTTAACAACTTCTTCCTCTCTGT
TCACAAAAATTACTCCTCCAGCTACACCAAAACGATTCGGTTTTACCTCT
CTGCCAACTTTAATTAATTTCCAGTACCCAAAGCTCTCATCTTGCTGGTC
CCGCTCTCACCCAGCTGGGTTTCGCTCAGTTCTTGCGGTGGTAGATGAGG
AAGCGGTAGTAGTTGAAGATGAGATTAACGGCAAGGATAATGTTGGTGGA
AACGAAGTGGACGACGACAGTTCAGTCGAAGAGCCAAGGAGCCGCGCAAG
GCCCTGTGAGTTATACGTGTGTAACTTGCCCAGGAGCTTTGACATTTCAG
AGCTTCTTGAGATGTTCAAGCCTTTTGGAACCGTTCTTTCCGTTGAGGTT
TCGAGGAATCCCGAAACAGGCATAAGTCGTGGATGCGGTTACCTGACAAT
GGGTTCGATCAATTCAGCAAAAAATGCAATTATTGCATTGGACGGATCTG
ATGTGGGTGGACGTGAAATGCGGGTGAGATTTTCAATTGATATGAATTCG
CGGACTAGGAATGCTGAGGCATTGATTTCACCACCAAAGAAGATTTTTGT
CTATGAAAGCCCTCATAAATTATATGTTGGCAATCTTTCCTGGGCTGTAA
AACCTGAGGATTTGAGAAATCATTTTGGCCGGTTTGGGACTGTGGTCAGT
GCTAGAGTGTTGCACGATCGTAAAGGACAAACCACCCGAGTTTTTGGGTT
TATTTCCTTCTCTTCTGACGCAGAACGTGATGCTGCACTTTCTTTAAATG
GAACAGACTTTCGGGGTCGGACAATAATTGT
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