CX043586
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12 Identity = 50/180 (27.78%), Postives = 93/180 (51.67%), Query Frame = 2 Query: 260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 793 D +S +EE +A +YV N+ ++ E E+F PFG + S+ + ++ E G S+G G++ +A A+ L+ ++ G+++ V + RT + + K+ Y+ + L+V NL + E L F FGT+ S++V+ D G+ ++ FGF+ FS+ E A++ Sbjct: 235 DRESKLEE--MKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVN-LFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGK-SKGFGFVCFSTPEEATKAIT 409
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12 Identity = 52/173 (30.06%), Postives = 92/173 (53.18%), Query Frame = 2 Query: 311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTI 826 +++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI ++G + +++ V I R E + K F +YV N++ V E+ R F +FG V S+ + D++G+ +R FGF++F++ +A A LNG DFRG+ + Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGK-SRGFGFVNFTTHEAAAQAVDELNGKDFRGQDL 311
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12 Identity = 52/174 (29.89%), Postives = 88/174 (50.57%), Query Frame = 2 Query: 311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 826 +Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL + E LR F FGT+ SA+V+ +G ++ FGF+ FSS E A+ T+ GR + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12 Identity = 52/174 (29.89%), Postives = 88/174 (50.57%), Query Frame = 2 Query: 311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 826 +Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL + E LR F FGT+ SA+V+ +G ++ FGF+ FSS E A+ T+ GR + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12 Identity = 52/174 (29.89%), Postives = 88/174 (50.57%), Query Frame = 2 Query: 311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 826 +Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL + E LR F FGT+ SA+V+ +G ++ FGF+ FSS E A+ T+ GR + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.562e-12 Identity = 54/176 (30.68%), Postives = 92/176 (52.27%), Query Frame = 2 Query: 311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 826 +YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ ++G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ + LR F +G + SA+V+ +G ++ FGF+ FSS E A+ T+ GR + Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQM--KQDRLRRYQGVN-LYVKNLDDSIDDDKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.959e-12 Identity = 52/192 (27.08%), Postives = 97/192 (50.52%), Query Frame = 2 Query: 260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTI 826 D +S EE +A +YV N+ + +L ++F P+G + S+ + ++ E G S+G G++ +A A+ L+ ++ G+++ V + R + + K+ Y+ + L++ NL + E L F FGT+ SARV+ D G+ ++ FGF+ FSS E A++ +N F G+ + Sbjct: 220 DRESKFEE--IKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAE-GKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVN-LFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGK-SKGFGFVCFSSPEEATKAITEMNQRMFFGKPL 406
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.782e-12 Identity = 50/173 (28.90%), Postives = 90/173 (52.02%), Query Frame = 2 Query: 311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 826 +++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A+NAI ++G + +++ V I R E + K F +YV N+ E+ R+ F +FG + SA + D + +R FGF++F+S AA+ +LN DF+G+ + Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKL 307 HSP 2 Score: 68.9366 bits (167), Expect = 3.862e-11 Identity = 51/177 (28.81%), Postives = 88/177 (49.72%), Query Frame = 2 Query: 260 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 784 D S EE +A +YV N+ + E ++F+ FG + S ++R+ E+G SRG G++ S ++A A+ AL+ D G+++ V + + R + K Y+ + LY+ NLS + E LR F +GT+ SA+V+ D ++T SD+E++A Sbjct: 223 DRQSKFEE--MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVN-LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPEST---------SDSEKEA 387
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 7.782e-12 Identity = 52/174 (29.89%), Postives = 88/174 (50.57%), Query Frame = 2 Query: 311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 826 +Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL + E LR F FGT+ SA+V+ +G ++ FGF+ FSS E A+ T+ GR + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
BLAST of CX043586 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11 Identity = 52/176 (29.55%), Postives = 89/176 (50.57%), Query Frame = 2 Query: 311 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 826 +Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ ++G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E LR F FG++ SA+V+ + ++ FGF+ FSS E A+ T+ GR + Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAV----TEMNGRIV 358 The following BLAST results are available for this feature:
BLAST of CX043586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 42
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043586 ID=CX043586; Name=CX043586; organism=Citrus sinensis; type=EST; length=831bpback to top |