CX043567

Overview
NameCX043567
Unique NameCX043567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043567_ssr345 microsatellite CX043567_ssr345:345..356. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1683 contig Csv1_Contig1683:229..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.061e-40
Identity = 85/125 (68.00%), Postives = 101/125 (80.80%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKAHEISVLCDAEVA IVFS KGKL+EY+TDS M++ILERYERY YAE+ L + E E  GNW  EY KLKA++E +Q+  KH MGEDL  L+LKELQ +EQQ++S LK I SRK+ LML+SIS
Sbjct:   28 LLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESIS 152          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.103e-35
Identity = 89/221 (40.27%), Postives = 117/221 (52.94%), Query Frame = -2
Query:  187 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXXXXXXXXXXXLSXXXXXXXXXXQLNHDWNSSNVHLMQ----TLTNSSYQMGGGSGEEDEDTPTGHRANALLPAWMLRHLH 837
            LLKKAHEISVLCDA+VALIVFSTKGKL+E+S+ S ME ILERY+RY + ER +     E   NW  EY  LK++++ LQ++Q+  +GE L  L++KELQ +E Q++  LK IRS+KNQL+ +SIS                           +                 SS   +        TN+S     GSGE +         N+ LP WMLR  H
Sbjct:   28 LLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREEQNGATPSTSSPTPVTAPDPIPTTNNSQSQPRGSGESEAQPSPAQAGNSKLPPWMLRTSH 248          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 5.103e-35
Identity = 89/221 (40.27%), Postives = 117/221 (52.94%), Query Frame = -2
Query:  187 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXXXXXXXXXXXLSXXXXXXXXXXQLNHDWNSSNVHLMQ----TLTNSSYQMGGGSGEEDEDTPTGHRANALLPAWMLRHLH 837
            LLKKAHEISVLCDA+VALIVFSTKGKL+E+S+ S ME ILERY+RY + ER +     E   NW  EY  LK++++ LQ++Q+  +GE L  L++KELQ +E Q++  LK IRS+KNQL+ +SIS                           +                 SS   +        TN+S     GSGE +         N+ LP WMLR  H
Sbjct:   28 LLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREEQNGATPSTSSPTPVTAPDPIPTTNNSQSQPRGSGESEAQPSPAQAGNSKLPPWMLRTSH 248          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.590e-28
Identity = 64/125 (51.20%), Postives = 89/125 (71.20%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA+E+SVLCDAEVALIVFS +GKL+E+ + SCM + LERY+R  Y   +      E   ++  EY KLKA+++VLQR+ ++ +GEDL +LS KEL+ +E Q+D  L+ IRS K Q ML  ++
Sbjct:   28 LLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSYQ-EYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLA 151          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.076e-28
Identity = 67/124 (54.03%), Postives = 87/124 (70.16%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+S+LCDAEVALI+FS +G+LFE+S+ SCM + LERY    Y  +   A E E N     EY KLK R+E LQ  Q++ +GEDL  LS+KEL+ +E QI+  LK IRSRKNQ +L  +
Sbjct:   28 LLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEINYQ---EYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQL 148          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.076e-28
Identity = 67/124 (54.03%), Postives = 87/124 (70.16%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+S+LCDAEVALI+FS +G+LFE+S+ SCM + LERY    Y  +   A E E N     EY KLK R+E LQ  Q++ +GEDL  LS+KEL+ +E QI+  LK IRSRKNQ +L  +
Sbjct:   28 LLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEINYQ---EYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQL 148          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.890e-28
Identity = 63/124 (50.81%), Postives = 87/124 (70.16%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVALI+FS++GKL+E+ +   + + LERY+  CY   Q   N +    +W  E SKLKA+ E LQR Q+H +GEDL  LS+KELQ +E+Q++  L   R RK QLM++ +
Sbjct:   28 LLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG-ITKTLERYQHCCY-NAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQV 149          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.031e-27
Identity = 67/125 (53.60%), Postives = 87/125 (69.60%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQAN-EIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVALI+FST+G+LFE+ST SCM + LERY    Y     +A+  +E   +   EY KLK R+E LQ  Q++ +GEDL  LSLKEL+ +E QI+  L  IRS KNQ +L  +
Sbjct:   28 LLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQV 152          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.031e-27
Identity = 67/125 (53.60%), Postives = 87/125 (69.60%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQAN-EIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVALI+FST+G+LFE+ST SCM + LERY    Y     +A+  +E   +   EY KLK R+E LQ  Q++ +GEDL  LSLKEL+ +E QI+  L  IRS KNQ +L  +
Sbjct:   28 LLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQV 152          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.998e-27
Identity = 64/127 (50.39%), Postives = 90/127 (70.87%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYA--ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA+E+SVLCDAEVALI+FS +GKL+E+ +   M R LERY+++ Y   +  +Q  E E   +   EY KLKAR+E LQR Q++ +GEDL  L +KEL+ +E+Q+DS L+ IRS + Q ML  ++
Sbjct:   28 LLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLT 154          
The following BLAST results are available for this feature:
BLAST of CX043567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
MAD15_ORYSJ1.061e-4068.00MADS-box transcription factor 15 OS=Oryza sativa s... [more]
MAD18_ORYSJ5.103e-3540.27MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI5.103e-3540.27MADS-box transcription factor 18 OS=Oryza sativa s... [more]
CMB1_DIACA1.590e-2851.20MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MADS1_ORYSJ2.076e-2854.03MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI2.076e-2854.03MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS6_ORYSJ7.890e-2850.81MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MADS5_ORYSJ1.031e-2753.60MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI1.031e-2753.60MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS8_ORYSJ2.998e-2750.39MADS-box transcription factor 8 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12A02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12A02-A4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043567 ID=CX043567; Name=CX043567; organism=Citrus sinensis; type=EST; length=838bp
TTTTTTTTTTTTTTTTTAGTACATATAACAAACCTTTTTACAGCTCTGGG
CATATAATATAACCATGTTAAGATGAGTGCTCGTCCATATACATATATCA
ATTTCTTGTTCTGATTAATTTCATTAAGCAAAATATGAATCGCACATACT
GATAGTAATCAAGAACTCATGATCTGTAAATTATTAATGAAGGTGACGAA
GCATCCAAGCGGGCAGCAAAGCGTTAGCTCGATGTCCTGTCGGAGTATCC
TCGTCCTCCTCTCCGCTGCCCCCTCCCATTTGGTAAGAGCTATTGGTCAA
TGTCTGCATTAAATGAACATTGGATGAGTTCCAGTCATGATTTAGCTGCT
GCTGCTGTTCCCTGCACTGCGCCTCTTGGCTCAGTAGCTTCTCCTTTTCT
TTTACCTTCTTTGCAAGCAAGTTGTTTTGCTCTTTCAATAACTTGTCCTT
TTTCTGAAGCTCTGAAATGGATTGAAGCATGAGTTGGTTCTTTCTTGATC
GAATGAGTTTAAGACCAGAATCAATCTGCTGCTCTACACTTTGAAGCTCT
TTGAGACTTAAGTCTGCAAGATCCTCTCCCATGAAATGCTTTTGATTTCT
TTGTAAAACCTCCATCCTAGCTTTAAGCTTGGAATATTCCAATGTCCAGT
TTCCATTTGGTTCAATCTCATTTGCTTGAAGCTGCCTCTCCGCATAACAA
TACCTCTCATATCGTTCAAGGATTCTTTCCATGCATGAATCAGTAGAGTA
TTCAAAGAGTTTGCCTTTAGTGGAGAAGACGATCAAAGCAACTTCAGCGT
CACAAAGCACAGAGATCTCATGGGCTTTTTTCAATAAA
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