CX043567

Overview
NameCX043567
Unique NameCX043567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043567_ssr345 microsatellite CX043567_ssr345:345..356. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1683 contig Csv1_Contig1683:229..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.488e-26
Identity = 60/124 (48.39%), Postives = 88/124 (70.97%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+S+LCDAEVAL++FS  G+L+++S+ S M + LERY+RY YA +   A   +   N   EY  LKA +E+LQ++Q++ +GEDLA L+  EL+ +E Q+   LK IRSRK Q++L  +
Sbjct:   28 LLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDEL 151          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.943e-26
Identity = 64/125 (51.20%), Postives = 88/125 (70.40%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEP-NGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M + LERY++  Y   +   +  E    +   EY KLKAR E LQR+Q++ +GEDL  L+ KEL+S+E+Q+D  LK IRS + QLML  +
Sbjct:   28 LLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQL 152          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.315e-26
Identity = 61/125 (48.80%), Postives = 85/125 (68.00%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M + L+RY++  Y   ++     +   N   EY KLK R E LQR Q++ +GEDL  L+ KEL+ +E+Q+D  LK +RS K Q ML  +S
Sbjct:   28 LLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLS 152          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.330e-26
Identity = 68/136 (50.00%), Postives = 88/136 (64.71%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTL------------EYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVALIVFS +GKL+E+ + S M + LERY++  Y           P GN T             EY KLKAR E LQR+Q++ MGEDL  LS K+L+++E+Q+DS LK IRS + Q ML  +
Sbjct:   28 LLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGA---------PEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQL 154          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.385e-26
Identity = 65/132 (49.24%), Postives = 88/132 (66.67%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYA-------ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M R LERY++  Y         R+  A E+        EY KLK R + LQR Q++ +GEDL  LS KEL+S+E+Q+DS LK IR+ + Q ML  ++
Sbjct:   28 LLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQ----QEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLN 155          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.385e-26
Identity = 63/126 (50.00%), Postives = 88/126 (69.84%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEP-NGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M + LERY++  Y   +   +  E    +   EY KLK R E LQR+Q++ +GEDL  L+ KEL+S+E+Q+D  LK IRS + QLML  ++
Sbjct:   28 LLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLT 153          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 9.645e-26
Identity = 61/127 (48.03%), Postives = 90/127 (70.87%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYA--ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA+E+SVLCDAEVALI+FS +GKL+E+ +   M + LE+Y++  YA  E  +Q  E E       EY KLKAR+E LQR Q++ +GEDL  L +KEL+S+E+Q+DS LK +R+ + + ++  ++
Sbjct:   28 LLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLT 154          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 9.645e-26
Identity = 61/127 (48.03%), Postives = 90/127 (70.87%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYA--ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA+E+SVLCDAEVALI+FS +GKL+E+ +   M + LE+Y++  YA  E  +Q  E E       EY KLKAR+E LQR Q++ +GEDL  L +KEL+S+E+Q+DS LK +R+ + + ++  ++
Sbjct:   28 LLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLT 154          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.260e-25
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA+E+SVLCDAEV+LIVFS +GKL+E+ + S M + LERY++  Y   ++     +   N   EY KLK R E LQR Q++ +GEDL  L+ KEL+ +E+Q+D  LK +R  K Q ML  +S
Sbjct:   28 LLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLS 152          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.645e-25
Identity = 59/125 (47.20%), Postives = 88/125 (70.40%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCY-AERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVALI+FS++GKL+E+ +   + + LE+Y   CY A+    A     + +W  E S+LK ++E LQR+Q+H +GEDL  LS+KELQ +E+Q++  L   R RK Q+M++ +
Sbjct:   28 LLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG-INKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQV 151          
The following BLAST results are available for this feature:
BLAST of CX043567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
MAD34_ORYSJ1.488e-2648.39MADS-box transcription factor 34 OS=Oryza sativa s... [more]
AGL9_PETHY1.943e-2651.20Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
SEP1_ARATH3.315e-2648.80Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
MTF1_PEA4.330e-2650.00MADS-box transcription factor 1 OS=Pisum sativum G... [more]
SEP3_ARATH7.385e-2649.24Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_SOLLC7.385e-2650.00Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
MADS7_ORYSJ9.645e-2648.03MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI9.645e-2648.03MADS-box transcription factor 7 OS=Oryza sativa su... [more]
SEP2_ARATH1.260e-2548.80Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
MAD17_ORYSJ1.645e-2547.20MADS-box transcription factor 17 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12A02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12A02-A4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043567 ID=CX043567; Name=CX043567; organism=Citrus sinensis; type=EST; length=838bp
TTTTTTTTTTTTTTTTTAGTACATATAACAAACCTTTTTACAGCTCTGGG
CATATAATATAACCATGTTAAGATGAGTGCTCGTCCATATACATATATCA
ATTTCTTGTTCTGATTAATTTCATTAAGCAAAATATGAATCGCACATACT
GATAGTAATCAAGAACTCATGATCTGTAAATTATTAATGAAGGTGACGAA
GCATCCAAGCGGGCAGCAAAGCGTTAGCTCGATGTCCTGTCGGAGTATCC
TCGTCCTCCTCTCCGCTGCCCCCTCCCATTTGGTAAGAGCTATTGGTCAA
TGTCTGCATTAAATGAACATTGGATGAGTTCCAGTCATGATTTAGCTGCT
GCTGCTGTTCCCTGCACTGCGCCTCTTGGCTCAGTAGCTTCTCCTTTTCT
TTTACCTTCTTTGCAAGCAAGTTGTTTTGCTCTTTCAATAACTTGTCCTT
TTTCTGAAGCTCTGAAATGGATTGAAGCATGAGTTGGTTCTTTCTTGATC
GAATGAGTTTAAGACCAGAATCAATCTGCTGCTCTACACTTTGAAGCTCT
TTGAGACTTAAGTCTGCAAGATCCTCTCCCATGAAATGCTTTTGATTTCT
TTGTAAAACCTCCATCCTAGCTTTAAGCTTGGAATATTCCAATGTCCAGT
TTCCATTTGGTTCAATCTCATTTGCTTGAAGCTGCCTCTCCGCATAACAA
TACCTCTCATATCGTTCAAGGATTCTTTCCATGCATGAATCAGTAGAGTA
TTCAAAGAGTTTGCCTTTAGTGGAGAAGACGATCAAAGCAACTTCAGCGT
CACAAAGCACAGAGATCTCATGGGCTTTTTTCAATAAA
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