CX043567

Overview
NameCX043567
Unique NameCX043567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043567_ssr345 microsatellite CX043567_ssr345:345..356. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1683 contig Csv1_Contig1683:229..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.665e-25
Identity = 64/132 (48.48%), Postives = 87/132 (65.91%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYA-------ERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA+E+SVLCDAEVALI+FS +GKL+E+ + S M R LERY++  Y         R+  A E+        EY KLK R + LQR Q++ +GEDL  LS KEL+ +E+Q+DS LK IR+ + Q ML  ++
Sbjct:   28 LLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQ----QEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLN 155          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.819e-24
Identity = 58/125 (46.40%), Postives = 86/125 (68.80%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA+E+SVLCDAEVALI+FS +GKL+E+ + + M + LE+Y++  +   +      E   +   EY KLK R+E LQR+Q++ +GEDL  L  KEL+ +E+Q+DS L+ IRS + Q ML  ++
Sbjct:   28 LLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQKCNFGSPESTIISRETQSSQQ-EYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLA 151          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.912e-24
Identity = 59/128 (46.09%), Postives = 91/128 (71.09%), Query Frame = -2
Query:  472 LLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERYCYAERQLQANEI-----EPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQ 837
            LLKKAHEI+VLCD +VA IVFS KG LF Y S+ + MERILE+Y+R+   E   + N +     E  G+ + ++ KL+ R+E L+++Q++ MG++L  L+L+++Q +E QID+ L  IRSRK +L+++
Sbjct:   28 LLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRH---ELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLME 152          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.912e-24
Identity = 54/126 (42.86%), Postives = 91/126 (72.22%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA+E+SVLCDAE+AL++FS +GKL+E+ S+ S M R +++Y ++ YA      +  +    +  +Y KLK+R+E+LQ +Q+H +GE+L+++ + EL+ +E+Q+D+ L+ IRS K + ML  +S
Sbjct:   28 LLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQ-DYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLS 152          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.480e-23
Identity = 61/125 (48.80%), Postives = 85/125 (68.00%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYST-DSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKAHE+SVLCDAE+ LI+FS+ GKLFEYS+  S M++I+ERY++   A    +  E + N +   E +++K   E LQ N +  MGEDL  L++ EL  + QQ++S    +RSRKNQLMLQ +
Sbjct:   28 LLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSGA----RITEYD-NQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQL 147          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.643e-23
Identity = 52/127 (40.94%), Postives = 91/127 (71.65%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYER--YCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA+E+SVLCDAEVALIVFS++G+L+EYS ++ ++  ++RY++   C +       E+     +  E +KL+ ++++LQ   KH +G+++++LSLKEL+ +E +++ G+  IR+RKN+L+   I+
Sbjct:   28 LLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEIN 154          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.643e-23
Identity = 55/124 (44.35%), Postives = 85/124 (68.55%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVALI+FS++GKL+E+ +   +E  +ERY R CY          E   +W  E +KLK++ E L R  ++ +GEDL ++ +KELQ++E+Q+++ L   R RK Q+M++ +
Sbjct:   28 LLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVG-IESTIERYNR-CYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEM 149          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.904e-22
Identity = 56/125 (44.80%), Postives = 92/125 (73.60%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVALIVFS++G+L+EY+ +S ++  +ERY++ C ++     +  E N   +  E SKL+A++  LQ   ++F+GE LA L+L++L+++EQ+I+ G+  IR++KN+L+   I
Sbjct:   44 LLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VKATIERYKKAC-SDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEI 166          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.793e-22
Identity = 57/125 (45.60%), Postives = 91/125 (72.80%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVALIVFS++G+L+EY+ +S ++  +ERY++ C ++     +  E N   +  E SKL+A++  LQ   ++ +GE LA LSL++L+++EQ+I+ G+  IRS+KN+L+   I
Sbjct:   44 LLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VKATIERYKKAC-SDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEI 166          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.104e-21
Identity = 56/125 (44.80%), Postives = 88/125 (70.40%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVAL+VFS +G+L+EY+ +S ++  +ERY++ C ++     +  E N   +  E SKL+A++  L    ++ MGE LA + LKEL+++EQ+I+ G+  IRS+KN+L+   I
Sbjct:   44 LLKKAYELSVLCDAEVALVVFSNRGRLYEYANNS-VKATIERYKKAC-SDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEI 166          
The following BLAST results are available for this feature:
BLAST of CX043567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
AGL9_SINAL3.665e-2548.48Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_ARADE1.819e-2446.40Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
MAD20_ORYSJ6.912e-2446.09MADS-box transcription factor 20 OS=Oryza sativa s... [more]
AGL3_ARATH6.912e-2442.86Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
GGM13_GNEGN4.480e-2348.80MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
MAD13_ORYSJ7.643e-2340.94MADS-box transcription factor 13 OS=Oryza sativa s... [more]
AGL6_ARATH7.643e-2344.35Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
AG_PETHY2.904e-2244.80Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_TOBAC3.793e-2245.60Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC1.104e-2144.80Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12A02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12A02-A4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043567 ID=CX043567; Name=CX043567; organism=Citrus sinensis; type=EST; length=838bp
TTTTTTTTTTTTTTTTTAGTACATATAACAAACCTTTTTACAGCTCTGGG
CATATAATATAACCATGTTAAGATGAGTGCTCGTCCATATACATATATCA
ATTTCTTGTTCTGATTAATTTCATTAAGCAAAATATGAATCGCACATACT
GATAGTAATCAAGAACTCATGATCTGTAAATTATTAATGAAGGTGACGAA
GCATCCAAGCGGGCAGCAAAGCGTTAGCTCGATGTCCTGTCGGAGTATCC
TCGTCCTCCTCTCCGCTGCCCCCTCCCATTTGGTAAGAGCTATTGGTCAA
TGTCTGCATTAAATGAACATTGGATGAGTTCCAGTCATGATTTAGCTGCT
GCTGCTGTTCCCTGCACTGCGCCTCTTGGCTCAGTAGCTTCTCCTTTTCT
TTTACCTTCTTTGCAAGCAAGTTGTTTTGCTCTTTCAATAACTTGTCCTT
TTTCTGAAGCTCTGAAATGGATTGAAGCATGAGTTGGTTCTTTCTTGATC
GAATGAGTTTAAGACCAGAATCAATCTGCTGCTCTACACTTTGAAGCTCT
TTGAGACTTAAGTCTGCAAGATCCTCTCCCATGAAATGCTTTTGATTTCT
TTGTAAAACCTCCATCCTAGCTTTAAGCTTGGAATATTCCAATGTCCAGT
TTCCATTTGGTTCAATCTCATTTGCTTGAAGCTGCCTCTCCGCATAACAA
TACCTCTCATATCGTTCAAGGATTCTTTCCATGCATGAATCAGTAGAGTA
TTCAAAGAGTTTGCCTTTAGTGGAGAAGACGATCAAAGCAACTTCAGCGT
CACAAAGCACAGAGATCTCATGGGCTTTTTTCAATAAA
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