CX043567

Overview
NameCX043567
Unique NameCX043567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043567_ssr345 microsatellite CX043567_ssr345:345..356. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1683 contig Csv1_Contig1683:229..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.211e-21
Identity = 53/125 (42.40%), Postives = 88/125 (70.40%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVALIVFST+G+L+EY+ +S ++  +ERY++ C  +    ++  E N   +  E SKL+  +  +Q+N ++ MGE L  L++++L+ +E +++ G+  IRS+KN+L+   I
Sbjct:   44 LLKKAYELSVLCDAEVALIVFSTRGRLYEYANNS-VKGTIERYKKAC-TDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEI 166          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.342e-21
Identity = 50/124 (40.32%), Postives = 85/124 (68.55%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVALIVFST+G+L+EY+ ++ +   +ERY++ C         +      +  E +KL+ +++ +Q + ++ MG+ L+ LS+KEL+ VE +++  +  IRS+K++L+L  I
Sbjct:   28 LLKKAYELSVLCDAEVALIVFSTRGRLYEYANNN-IRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEI 150          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.220e-20
Identity = 51/125 (40.80%), Postives = 88/125 (70.40%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVAL++FST+G+L+EY+ +S +   +ERY++ C ++     +  E N   +  E SKL+ ++  +Q + +H +GE L  L+ KEL+++E +++ G+  +RS+KN+L++  I
Sbjct:   43 LLKKAYELSVLCDAEVALVIFSTRGRLYEYANNS-VRGTIERYKKAC-SDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEI 165          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.594e-20
Identity = 54/124 (43.55%), Postives = 82/124 (66.13%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEV+LI+FST GKL+E+S    + R +ERY  Y   +  L  + +E       E +KLK + E L R  ++ +GEDL  +S+KELQ++E+Q++  L   R +K Q+M++ +
Sbjct:   28 LLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVG-VGRTIERY--YRCKDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQM 148          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.056e-20
Identity = 49/124 (39.52%), Postives = 84/124 (67.74%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            + KKA E+++LCDAEV L++FS+ G+L+EYS+ S M+ +++RY +    E+Q  AN       W  E + L+ ++  LQ N +  MGEDL+ L++KELQS+E Q++  L+ +R++K+ +++  I
Sbjct:   28 IFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTS-MKSVIDRYGK-SKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEI 149          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.033e-19
Identity = 53/126 (42.06%), Postives = 83/126 (65.87%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQL--QANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            L+KKA E+++LCDAEV LI+FS+ GKL+++++ S M+ +++RY +    ++QL   A+E++    W  E + L+  +  LQ N +  MGE L  LS+ EL S+E QI+  L+ IR RK QL+ Q I
Sbjct:   28 LIKKAKELAILCDAEVGLIIFSSTGKLYDFASSS-MKSVIDRYNKSKIEQQQLLNPASEVK---FWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEI 149          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.762e-19
Identity = 49/125 (39.20%), Postives = 86/125 (68.80%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVAL++FST+G+L+EY+ +S +   +ERY++ C ++        E N   +  E SKL+ ++  +Q   +H +GE L  L+ KEL+++E +++ G+  +RS+K+++++  I
Sbjct:   43 LLKKAYELSVLCDAEVALVIFSTRGRLYEYANNS-VRGTIERYKKAC-SDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEI 165          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.005e-19
Identity = 47/126 (37.30%), Postives = 86/126 (68.25%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN--WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+++LCDAE+ALIVFS++G+L+E+S  +     +ERY++   A     A  I+ N +  +  E +K++ +++ LQ   +H +GE + +++ KEL+S+E +++ G+  IRS+K++L+   I
Sbjct:   28 LLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKK-ASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEI 152          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.948e-18
Identity = 52/125 (41.60%), Postives = 86/125 (68.80%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNG-NWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVAL+VFS++G+L+EYS +S  E I ERY++   ++    +   E N  ++  E +KLK ++  LQ + +  +G+++  ++ +EL+ +E ++D GL  IR+RKN+L+   I
Sbjct:   70 LLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETI-ERYKK-ANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEI 192          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.544e-18
Identity = 51/125 (40.80%), Postives = 85/125 (68.00%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVALIVFS++G+L+EYS +S ++  +ERY++   ++     +  E N   +  E +KL+ ++  +Q + +  MGE +  +S KEL+++E ++D  +  IRS+KN+L+   I
Sbjct:   44 LLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS-VKGTIERYKK-AISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEI 166          
The following BLAST results are available for this feature:
BLAST of CX043567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
AG_PANGI3.211e-2142.40Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AGL11_ARATH9.342e-2140.32Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
AGL1_ARATH1.220e-2040.80Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AGL13_ARATH1.594e-2043.55Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
MAD27_ORYSJ6.056e-2039.52MADS-box transcription factor 27 OS=Oryza sativa s... [more]
AGL21_ARATH1.033e-1942.06Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
AGL5_ARATH1.762e-1939.20Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
MAD21_ORYSJ3.005e-1937.30MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MAD58_ORYSJ1.948e-1841.60MADS-box transcription factor 58 OS=Oryza sativa s... [more]
AG_BRANA2.544e-1840.80Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12A02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12A02-A4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043567 ID=CX043567; Name=CX043567; organism=Citrus sinensis; type=EST; length=838bp
TTTTTTTTTTTTTTTTTAGTACATATAACAAACCTTTTTACAGCTCTGGG
CATATAATATAACCATGTTAAGATGAGTGCTCGTCCATATACATATATCA
ATTTCTTGTTCTGATTAATTTCATTAAGCAAAATATGAATCGCACATACT
GATAGTAATCAAGAACTCATGATCTGTAAATTATTAATGAAGGTGACGAA
GCATCCAAGCGGGCAGCAAAGCGTTAGCTCGATGTCCTGTCGGAGTATCC
TCGTCCTCCTCTCCGCTGCCCCCTCCCATTTGGTAAGAGCTATTGGTCAA
TGTCTGCATTAAATGAACATTGGATGAGTTCCAGTCATGATTTAGCTGCT
GCTGCTGTTCCCTGCACTGCGCCTCTTGGCTCAGTAGCTTCTCCTTTTCT
TTTACCTTCTTTGCAAGCAAGTTGTTTTGCTCTTTCAATAACTTGTCCTT
TTTCTGAAGCTCTGAAATGGATTGAAGCATGAGTTGGTTCTTTCTTGATC
GAATGAGTTTAAGACCAGAATCAATCTGCTGCTCTACACTTTGAAGCTCT
TTGAGACTTAAGTCTGCAAGATCCTCTCCCATGAAATGCTTTTGATTTCT
TTGTAAAACCTCCATCCTAGCTTTAAGCTTGGAATATTCCAATGTCCAGT
TTCCATTTGGTTCAATCTCATTTGCTTGAAGCTGCCTCTCCGCATAACAA
TACCTCTCATATCGTTCAAGGATTCTTTCCATGCATGAATCAGTAGAGTA
TTCAAAGAGTTTGCCTTTAGTGGAGAAGACGATCAAAGCAACTTCAGCGT
CACAAAGCACAGAGATCTCATGGGCTTTTTTCAATAAA
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