CX043567

Overview
NameCX043567
Unique NameCX043567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043567_ssr345 microsatellite CX043567_ssr345:345..356. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1683 contig Csv1_Contig1683:229..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.323e-18
Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKAHE+SVLCDAEVA+IVFS  GKLFE+S+ S M++ L RY  Y  +      N    N     E   LK  + +LQ    H  G+ L  LSLKELQ +E+Q++  L  +R RK  L+ + +
Sbjct:   28 LLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTS-MKKTLLRYGNYQISSDVPGINCKTENQEECTEVDLLKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQL 150          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.668e-18
Identity = 50/125 (40.00%), Postives = 85/125 (68.00%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGN-WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVALIVFS++G+L+EYS +S ++  +ERY++   ++     +  E N   +  E +KL+ ++  +Q + +  MGE +  +S KEL+++E +++  +  IRS+KN+L+   I
Sbjct:   44 LLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS-VKGTIERYKK-AISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEI 166          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.668e-18
Identity = 48/124 (38.71%), Postives = 80/124 (64.52%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA E+SVLCDAEV+LI+FS KGKL+E+++ S M+  ++RY R+       +    E   +   E + +  ++E L+ +++  +GE +   S++ELQ +EQQ++  +K IR+RK Q+  + I
Sbjct:   28 LLKKAFELSVLCDAEVSLIIFSPKGKLYEFAS-SNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQI 150          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.668e-18
Identity = 47/124 (37.90%), Postives = 80/124 (64.52%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E++VLCDA V +++FS+ GK+FEY + +C  R  E  E+Y +A       EI  +    LE +++K  ME L+   + + G+DL+ L+L ++  +EQQ++  +  +R+RK+QL+ Q +
Sbjct:   28 LLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLR--ELIEQYQHATNS-HFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQL 148          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.668e-18
Identity = 47/127 (37.01%), Postives = 79/127 (62.20%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSC-MERILERYERYCYAERQLQAN--EIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA E+++LCDA++ +I+FS+ GK+FE+S+    M  I++RY++       L  N   +  N     E +++K  ++ LQ   +HF GEDL  L++ E+  +EQQ++  +  +RSRK QL+ Q +
Sbjct:    3 LLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQK-------LSGNCAPVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQL 122          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.649e-17
Identity = 50/126 (39.68%), Postives = 86/126 (68.25%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNG-NWTLEYSKLKARMEVLQR-NQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+SVLCDAEVALIVFS++G+L+EY+ +S ++  +ERY++   ++        E N  ++  E SKL+ ++  LQ  N +  +G+ +  +SL++L+ VE +++ G+  IR+RKN+L+   +
Sbjct:   28 LLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VKSTVERYKK-ANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEV 151          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.649e-17
Identity = 48/124 (38.71%), Postives = 78/124 (62.90%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA E+S+LCDAEV L+VFS+ G+L+E+S+ + M+ +++RY      E  L  N       W  E + L+ ++  LQ + K  MGE+L+ L +++LQ +E +++  L+ IR RK+ L+   I
Sbjct:   28 LLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTN-MKTVIDRYTN--AKEELLGGNATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDNLLKSEI 148          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.069e-16
Identity = 46/127 (36.22%), Postives = 83/127 (65.35%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYC--YAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA E+SVLCDAEVALIVFS +G+L+E+++   +++ ++RY+ Y   +   +    +I+   + TL  +K   ++E L  +++  +GE+L   S++EL+ +E +++  L  IR +K +L+ Q I+
Sbjct:   28 LLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAK---KLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIA 151          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.069e-16
Identity = 43/124 (34.68%), Postives = 81/124 (65.32%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            L+KKA E+++LCDA+V LIVFS  G+L+++S+ S M+ I+ERY+     E     N +     W  E + L+ +++ L  N +  +GE++++ ++++LQ ++ Q++  L  IR++K+QL+ + I
Sbjct:   28 LMKKARELAILCDADVGLIVFSCTGRLYDFSSSS-MKSIIERYQE-AGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEI 149          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.396e-16
Identity = 43/125 (34.40%), Postives = 79/125 (63.20%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSC-MERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E++VLCDA V +++FS+ GK+FEY + +C +  ++E Y+            EI  +    +E ++++  ME L    + F G+DL++L+L ++  +EQQ++  +  +R+RK+QL+ Q +
Sbjct:   28 LLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQ----TVTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQL 148          
The following BLAST results are available for this feature:
BLAST of CX043567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
AGL15_BRANA3.323e-1845.16Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
AG_ARATH5.668e-1840.00Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
SOC1_ARATH9.668e-1838.71MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
M17_MAIZE9.668e-1837.90MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
AP32_ASAEU9.668e-1837.01MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
MADS3_ORYSJ1.649e-1739.68MADS-box transcription factor 3 OS=Oryza sativa su... [more]
MAD57_ORYSJ1.649e-1738.71MADS-box transcription factor 57 OS=Oryza sativa s... [more]
MAD56_ORYSJ1.069e-1636.22MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD25_ORYSJ1.069e-1634.68MADS-box transcription factor 25 OS=Oryza sativa s... [more]
MAD29_ORYSJ1.396e-1634.40MADS-box transcription factor 29 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12A02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12A02-A4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043567 ID=CX043567; Name=CX043567; organism=Citrus sinensis; type=EST; length=838bp
TTTTTTTTTTTTTTTTTAGTACATATAACAAACCTTTTTACAGCTCTGGG
CATATAATATAACCATGTTAAGATGAGTGCTCGTCCATATACATATATCA
ATTTCTTGTTCTGATTAATTTCATTAAGCAAAATATGAATCGCACATACT
GATAGTAATCAAGAACTCATGATCTGTAAATTATTAATGAAGGTGACGAA
GCATCCAAGCGGGCAGCAAAGCGTTAGCTCGATGTCCTGTCGGAGTATCC
TCGTCCTCCTCTCCGCTGCCCCCTCCCATTTGGTAAGAGCTATTGGTCAA
TGTCTGCATTAAATGAACATTGGATGAGTTCCAGTCATGATTTAGCTGCT
GCTGCTGTTCCCTGCACTGCGCCTCTTGGCTCAGTAGCTTCTCCTTTTCT
TTTACCTTCTTTGCAAGCAAGTTGTTTTGCTCTTTCAATAACTTGTCCTT
TTTCTGAAGCTCTGAAATGGATTGAAGCATGAGTTGGTTCTTTCTTGATC
GAATGAGTTTAAGACCAGAATCAATCTGCTGCTCTACACTTTGAAGCTCT
TTGAGACTTAAGTCTGCAAGATCCTCTCCCATGAAATGCTTTTGATTTCT
TTGTAAAACCTCCATCCTAGCTTTAAGCTTGGAATATTCCAATGTCCAGT
TTCCATTTGGTTCAATCTCATTTGCTTGAAGCTGCCTCTCCGCATAACAA
TACCTCTCATATCGTTCAAGGATTCTTTCCATGCATGAATCAGTAGAGTA
TTCAAAGAGTTTGCCTTTAGTGGAGAAGACGATCAAAGCAACTTCAGCGT
CACAAAGCACAGAGATCTCATGGGCTTTTTTCAATAAA
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