CX043567

Overview
NameCX043567
Unique NameCX043567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043567_ssr345 microsatellite CX043567_ssr345:345..356. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1683 contig Csv1_Contig1683:229..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.823e-16
Identity = 52/125 (41.60%), Postives = 78/125 (62.40%), Query Frame = -2
Query:  478 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSK-----LKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM 837
            LLKKA E+SVLCDAEVALI+FS +GKL+E+S+ S + + +ERY      ++++Q        N   + SK     L  ++E L+ + +  MGE L   S++ELQ +E Q+D  L  IR++K QL+
Sbjct:   28 LLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERY------QKRIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLL 146          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.110e-16
Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            L KKA E+SVLCDA+VALI+FS+ GKLF+YS+ S M++ILER + +     +L    +E        YS+L   +       +   GE+L  L+++ELQ +E+ +++GL  +  RK   +++ I+
Sbjct:   28 LFKKAEELSVLCDADVALIIFSSTGKLFDYSSSS-MKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREIN 151          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.062e-16
Identity = 49/125 (39.20%), Postives = 77/125 (61.60%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEY-STDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKK HE+SVLCDA++ LI+FS+KGKLFEY S    M +I+ RY +   A   ++ N ++       E +K++     LQ + + + G+DL+    +EL  +E+Q++  L  IR+RK +LM Q +
Sbjct:   31 LLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASLPVEDNRVQLYD----EVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQM 151          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.305e-16
Identity = 45/127 (35.43%), Postives = 83/127 (65.35%), Query Frame = -2
Query:  463 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYC--YAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 837
            LLKKA E+SVLCDAEVALIVFS +G+L+E+++   +++ ++RY+ Y   +   +    +I+   + TL  +K   ++E L  +++  +GE+L   S++EL+ +E +++  L  IR +K +L+ + I+
Sbjct:   28 LLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAK---KLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIA 151          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.305e-16
Identity = 48/123 (39.02%), Postives = 75/123 (60.98%), Query Frame = -2
Query:  478 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDS-CMERILERY--ERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLM 837
            L+KK HE+SVLCDA++ LIVFSTKGKL EY T    M++I++RY   +    E + +A     N     E +++K     LQ N + + G+DL+ +  +EL  +E+ +D  L  +R+RK +L+
Sbjct:   28 LMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSLNKVRARKLELL 150          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.049e-16
Identity = 53/124 (42.74%), Postives = 73/124 (58.87%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA E+SVLCDAEVA+IVFS  GKLFEYS+   M++ L RY  +    +   A++ E +     E   LK ++  LQ       G+ L  L+ KELQS+EQQ+   L  +R RK +L+   +
Sbjct:   28 LLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTG-MKQTLSRYGNH----QSSSASKAEED---CAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQL 143          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.543e-15
Identity = 42/124 (33.87%), Postives = 78/124 (62.90%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            L KKA E+S+LCDAEV L+VFS  GKLF++++ S ME+I++RY  +    ++ + ++++  G  +   ++LK  +       +   GE+L  L++++LQ +E+ ++SGL  +   K++ +L  I
Sbjct:   47 LFKKAEELSILCDAEVGLVVFSATGKLFQFASTS-MEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEI 169          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.016e-15
Identity = 49/126 (38.89%), Postives = 80/126 (63.49%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTL--EYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA E+SVLCDAEVAL++FS + KL+E+S+ S +   +ERY+R     +++  N    + +     E S L  ++E L+ +++  +GE +   S++ELQ +E Q+D  L  IR++K QL+ + I
Sbjct:   28 LLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSS-IAATIERYQRRI---KEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEI 149          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.633e-15
Identity = 45/126 (35.71%), Postives = 78/126 (61.90%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQ--ANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            L+KKA E+++LCDAEV LI+FS   KL+++++ S ++  +ER+      E++L   A+E++    W  E   L+  +  LQ N +   G +L  LS+KELQ++E Q++  L+ IR ++ Q++   I
Sbjct:   28 LIKKAKELAILCDAEVCLIIFSNTDKLYDFASSS-VKSTIERFNTAKMEEQELMNPASEVK---FWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNEI 149          
BLAST of CX043567 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.439e-15
Identity = 46/124 (37.10%), Postives = 78/124 (62.90%), Query Frame = -2
Query:  466 LLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSI 837
            LLKKA+E+++LCDA++ +IVFS  GK++EYS+     RI   ++RY  A    +  E++       E +++K     L+   + +MG+DLA L+L+++ ++EQQI+  L  +R RK QL+ Q +
Sbjct:   28 LLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPW--RIANIFDRYLKAP-STRFEEMDVQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQL 148          
The following BLAST results are available for this feature:
BLAST of CX043567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
AGL14_ARATH1.823e-1641.60Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
JOIN_SOLLC3.110e-1637.60MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
FBP24_PETHY4.062e-1639.20MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MAD56_ORYSI5.305e-1635.43MADS-box transcription factor 56 OS=Oryza sativa s... [more]
DEF21_ANTMA5.305e-1639.02MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
AGL15_ARATH9.049e-1642.74Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
MAD47_ORYSJ1.543e-1533.87MADS-box transcription factor 47 OS=Oryza sativa s... [more]
AGL19_ARATH2.016e-1538.89Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
AGL17_ARATH2.633e-1535.71Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
MAD31_ORYSJ3.439e-1537.10MADS-box transcription factor 31 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_12A02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12A02-A4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043567 ID=CX043567; Name=CX043567; organism=Citrus sinensis; type=EST; length=838bp
TTTTTTTTTTTTTTTTTAGTACATATAACAAACCTTTTTACAGCTCTGGG
CATATAATATAACCATGTTAAGATGAGTGCTCGTCCATATACATATATCA
ATTTCTTGTTCTGATTAATTTCATTAAGCAAAATATGAATCGCACATACT
GATAGTAATCAAGAACTCATGATCTGTAAATTATTAATGAAGGTGACGAA
GCATCCAAGCGGGCAGCAAAGCGTTAGCTCGATGTCCTGTCGGAGTATCC
TCGTCCTCCTCTCCGCTGCCCCCTCCCATTTGGTAAGAGCTATTGGTCAA
TGTCTGCATTAAATGAACATTGGATGAGTTCCAGTCATGATTTAGCTGCT
GCTGCTGTTCCCTGCACTGCGCCTCTTGGCTCAGTAGCTTCTCCTTTTCT
TTTACCTTCTTTGCAAGCAAGTTGTTTTGCTCTTTCAATAACTTGTCCTT
TTTCTGAAGCTCTGAAATGGATTGAAGCATGAGTTGGTTCTTTCTTGATC
GAATGAGTTTAAGACCAGAATCAATCTGCTGCTCTACACTTTGAAGCTCT
TTGAGACTTAAGTCTGCAAGATCCTCTCCCATGAAATGCTTTTGATTTCT
TTGTAAAACCTCCATCCTAGCTTTAAGCTTGGAATATTCCAATGTCCAGT
TTCCATTTGGTTCAATCTCATTTGCTTGAAGCTGCCTCTCCGCATAACAA
TACCTCTCATATCGTTCAAGGATTCTTTCCATGCATGAATCAGTAGAGTA
TTCAAAGAGTTTGCCTTTAGTGGAGAAGACGATCAAAGCAACTTCAGCGT
CACAAAGCACAGAGATCTCATGGGCTTTTTTCAATAAA
back to top