CX043563

Overview
NameCX043563
Unique NameCX043563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043563 vs. ExPASy Swiss-Prot
Match: NORM_RHILO (Probable multidrug resistance protein norM OS=Rhizobium loti GN=norM PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 54/209 (25.84%), Postives = 86/209 (41.15%), Query Frame = -2
Query:  127 ILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMXXXXXXXXXXXXXXXXXLGFGHNIWAGFFSN-----SPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRR 738
            +L+L LP A ++  E   F     L GL+    L    IA  +   S+++M+  GL+ A + RV    GAGNP+    A                  +    ++    F +     +  +I    S     AL    D  Q V +G+ RG     + +      ++ +G+P+  +L F    +  G+WIGL  GL   A+ LL   LRR
Sbjct:  250 LLRLGLPIAGILAFEVTIFNAAALLMGLIDADSLAAHAIA--IQIASISFMVPLGLNQAVTVRVGLAHGAGNPEGVSRAGWTAFVIGVSFMALMGLVMVLWPHLLISAFIDLANPANARVIALAVSFLVFAALFQVFDGAQAVAAGMLRGLHDTKVPMIYAAIGYWGVGLPLGVLLAFHFGFHGVGIWIGLSSGLAVVAALLLTRWLRR 456          
BLAST of CX043563 vs. ExPASy Swiss-Prot
Match: NORM_VIBF1 (Multidrug resistance protein norM OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=norM PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11
Identity = 61/226 (26.99%), Postives = 100/226 (44.25%), Query Frame = -2
Query:  106 ILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIA---MCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMXXXXXXXXXXXXXXXXXLGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILG----FKLSLYVKGLWIGLICGLFCQASSLLLITLRRKW-----TKVDM 747
            I  + KL LP A  +      FE+ +F A  +  S L ++++A   + +N  S+ +MI   ++ A S RV ++LG  + D AK A                          A  +S++ E+I    SL  L A+    D+VQ V +G  RG    +        +++ +G+P   +LG     +  + V G W G I GL    +S +L+T R  W     T++DM
Sbjct:  234 IYRLFKLGLPVALSIF-----FEVTLFAAVALLVSPLGSTVVAAHQVAINFSSLIFMIPMSIAVAVSIRVGHKLGEKDLDGAKVASYCGLAFGLLMACCTAILTLIFREQIAYLYSDNQEVITLAVSLMLLAAIYQCTDAVQVVAAGALRGYKDMNAIFKCTFVSYWIVGLPSGYVLGMTDWIREPMGVYGFWFGFIGGL---TTSAILLTCRLLWLQRNPTRIDM 451          
The following BLAST results are available for this feature:
BLAST of CX043563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
NORM_RHILO2.737e-1125.84Probable multidrug resistance protein norM OS=Rhiz... [more]
NORM_VIBF14.668e-1126.99Multidrug resistance protein norM OS=Vibrio fische... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11H09_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11H09-O17-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043563 ID=CX043563; Name=CX043563; organism=Citrus sinensis; type=EST; length=793bp
ATTAAGGTACATTTTGAAATTTTTTAAACATTTCTAATCACCATAATCCT
TTGTTATTGTATTTGGTTAAACTAAAAACAGGGGATTCATTTCCTCTGTT
CATGTCATGTCCACTTTAGTCCACTTACGGCGCAATGTAATCAACAAGAG
GGAGCTGGCTTGGCAGAAAAGGCCGCATATTAAGCCGATCCACAAACCCT
TAACATATAGACTCAACTTAAATCCAAGAATTGCTGCAATTGGCATGCCA
ATGAAATAGAATGTTGCCAAATTAGCCCACACAGCCAAGTGCTGCCAACC
ACATCCTCTTGCCACCCCTGATAAGACGCCTTGGACAGAATCAAGCGTTA
TTGAGAGAGCAAGAAGTGGTGTTAAAGAGGCAAACTCCTTTATGATTTCA
GGGCTGTTACTAAAGAAGCCAGCCCAGATGTTATGACCAAAACCTAGAGC
CAAAACAACCACGAGTGCAAGCAGTACAGAGAGCTTGACAGTCACAGCCA
TGGCATTCTTGGCTTGGTCGGGATTCCCTGCTCCCAATTCATTTGACACC
CTTGTGCTTGCAGCAGCACTAAGACCATAAGTAATCATGTAGGCAACAGA
TTCGGTATTTACACACATTGCGATCAATGAAGTAGTCAGTTCTGAGTTAG
GCATCAATCCTGCTAGGAACACTAGAATCTCAAAAGCCCAGTACTCGAGG
CATACCATTGCTGCAGAGGGCAGGGCTAGTTTTAAGATGGTGAGGATGAA
ACTGAATGATTCAAAAGAAAATCCTTCCCACGTATGCTCAAAC
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