DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BURP6 (Elongation factor Tu OS=Burkholderia pseudomallei (strain 668) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.911e-52
Identity = 101/157 (64.33%), Postives = 124/157 (78.98%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+K T   T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 IEIVGIKATAKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BURP1 (Elongation factor Tu OS=Burkholderia pseudomallei (strain 1710b) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.911e-52
Identity = 101/157 (64.33%), Postives = 124/157 (78.98%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+K T   T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 IEIVGIKATAKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BURP0 (Elongation factor Tu OS=Burkholderia pseudomallei (strain 1106a) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.911e-52
Identity = 101/157 (64.33%), Postives = 124/157 (78.98%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+K T   T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 IEIVGIKATAKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BURMS (Elongation factor Tu OS=Burkholderia mallei (strain SAVP1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.911e-52
Identity = 101/157 (64.33%), Postives = 124/157 (78.98%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+K T   T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 IEIVGIKATAKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BURMA (Elongation factor Tu OS=Burkholderia mallei GN=tuf1 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.911e-52
Identity = 101/157 (64.33%), Postives = 124/157 (78.98%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+K T   T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 IEIVGIKATAKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BURM9 (Elongation factor Tu OS=Burkholderia mallei (strain NCTC 10229) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.911e-52
Identity = 101/157 (64.33%), Postives = 124/157 (78.98%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+K T   T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 IEIVGIKATAKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BURM7 (Elongation factor Tu OS=Burkholderia mallei (strain NCTC 10247) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.911e-52
Identity = 101/157 (64.33%), Postives = 124/157 (78.98%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+K T   T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VLAKPG+ITPHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 IEIVGIKATAKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSITPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_MYXXD (Elongation factor Tu 2 OS=Myxococcus xanthus (strain DK 1622) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.911e-52
Identity = 100/157 (63.69%), Postives = 124/157 (78.98%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VGL+ T+   VTGVEMF+K LD+ MAGDN+G L+RG+++ D++RG VLAKPG+ITPHTKF A +YVL KEEGGRH+PFF GYRPQFY RTTDVTG V        E  +MVMPGD I + VELI PVA E+ +RFA+REGG+TVGAGV+  I+E
Sbjct:  245 VEVVGLRPTQKTVVTGVEMFRKLLDQGMAGDNIGALVRGLKREDMERGQVLAKPGSITPHTKFKAQIYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSVK-----LPENVEMVMPGDNIAIEVELITPVAMEKELRFAVREGGRTVGAGVVAEIVE 396
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_ZYMMO (Elongation factor Tu OS=Zymomonas mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.801e-52
Identity = 98/157 (62.42%), Postives = 125/157 (79.62%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VGL++T+  TVTGVEMF+K LD+  AGDN+G LLRG  + +++RG VLAKPG+ITPHT+F A VYVL K+EGGRH+PFFA YRPQFY RTTDVTG ++       E+ +MVMPGD I   V+LI P+A + G+RFAIREGG+TVGAGV+ SII+
Sbjct:  246 VEIVGLRDTKKTTVTGVEMFRKLLDQGQAGDNIGALLRGTARTEVERGQVLAKPGSITPHTEFKAEVYVLSKDEGGRHTPFFANYRPQFYFRTTDVTGEIT-----LPEDVEMVMPGDNIAFGVKLIAPIAMDPGLRFAIREGGRTVGAGVVSSIIK 397
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_PSEMY (Elongation factor Tu OS=Pseudomonas mendocina (strain ymp) GN=tuf PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.801e-52
Identity = 102/157 (64.97%), Postives = 121/157 (77.07%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL+ T   T TGVEMF+K LDE  AG+N G+LLRG ++ +++RG VLAKPGTI PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD IKMVV LI P+A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  246 IEIVGLRPTTKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDEVERGQVLAKPGTIKPHTKFEAEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSC-----ELPEGVEMVMPGDNIKMVVTLIKPIAMEDGLRFAIREGGRTVGAGVVAKIIE 397
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BURP62.911e-5264.33Elongation factor Tu OS=Burkholderia pseudomallei ... [more]
EFTU_BURP12.911e-5264.33Elongation factor Tu OS=Burkholderia pseudomallei ... [more]
EFTU_BURP02.911e-5264.33Elongation factor Tu OS=Burkholderia pseudomallei ... [more]
EFTU_BURMS2.911e-5264.33Elongation factor Tu OS=Burkholderia mallei (strai... [more]
EFTU_BURMA2.911e-5264.33Elongation factor Tu OS=Burkholderia mallei GN=tuf... [more]
EFTU_BURM92.911e-5264.33Elongation factor Tu OS=Burkholderia mallei (strai... [more]
EFTU_BURM72.911e-5264.33Elongation factor Tu OS=Burkholderia mallei (strai... [more]
EFTU2_MYXXD2.911e-5263.69Elongation factor Tu 2 OS=Myxococcus xanthus (stra... [more]
EFTU_ZYMMO3.801e-5262.42Elongation factor Tu OS=Zymomonas mobilis GN=tuf P... [more]
EFTU_PSEMY3.801e-5264.97Elongation factor Tu OS=Pseudomonas mendocina (str... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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