DC900270
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_RHOPS (Elongation factor Tu 1 OS=Rhodopseudomonas palustris (strain BisB5) GN=tuf1 PE=3 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50 Identity = 95/157 (60.51%), Postives = 121/157 (77.07%), Query Frame = 3 Query: 6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476 +++VG+++T+ T TGVEMF+K LD+ AGDN+G LLRG ++ D++RG VL KPG++ PHTKF A Y+L KEEGGRH+PFF YRPQFY RTTDVTG V E ++MVMPGD I M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE Sbjct: 245 IEIVGIRDTQKTTCTGVEMFRKLLDQGQAGDNIGCLLRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_RHOFD (Elongation factor Tu 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=tuf1 PE=3 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50 Identity = 93/156 (59.62%), Postives = 120/156 (76.92%), Query Frame = 3 Query: 6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473 +++VG+ +T+ T TGVEMF+K LD+ AGDNVG+LLRG ++ D+QRG VL KPG+I PHT F +YVL K+EGGRH+PFF YRPQFY RTTDVTG + + E +MVMPGD + ++V+LI P+A E+G+RFAIREGGKTVGAGV+ II Sbjct: 245 IEIVGIHDTQKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVQRGQVLCKPGSIKPHTHFTGEIYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAI-----ELPEGKEMVMPGDNVSIIVKLINPIAMEEGLRFAIREGGKTVGAGVVAKII 395
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_CAUSK (Elongation factor Tu 1 OS=Caulobacter sp. (strain K31) GN=tuf1 PE=3 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50 Identity = 94/157 (59.87%), Postives = 121/157 (77.07%), Query Frame = 3 Query: 6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476 V++VG++ + T TGVEMF+K LD+ AGDNVG+LLRG ++ D++RG VL KPG+ITPHTKF+A Y+L KEEGGRH+PFF YRPQFY RTTDVTG + E +M+MPGD ++ VELI P+A +QG+RFAIREGG+TVGAGV+ I+E Sbjct: 245 VEIVGIRAVQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLCKPGSITPHTKFVAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGIIK-----LREGVEMIMPGDNAELDVELITPIAMDQGLRFAIREGGRTVGAGVVAKIVE 396
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_POLSQ (Elongation factor Tu OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=tuf1 PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50 Identity = 96/156 (61.54%), Postives = 123/156 (78.85%), Query Frame = 3 Query: 6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473 ++++G+K T T TGVEMF+K LD+ AGDNVG+LLRG ++ +++RG VLAKPG+ITPHT F A VY+L K+EGGRH+PFF YRPQFY RTTDVTG SI KD+E MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+ I+ Sbjct: 245 IEIIGIKPTLKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREEVERGQVLAKPGSITPHTHFTAEVYILGKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVTITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIL 395
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_OCHA4 (Elongation factor Tu OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=tuf1 PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50 Identity = 95/157 (60.51%), Postives = 121/157 (77.07%), Query Frame = 3 Query: 6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476 V++VG+K T TVTGVEMF+K LD+ AGDN+G L+RGV + D++RG VL KPG++ PHTKF A Y+L K+EGGRH+PFF YRPQFY RTTDVTG V+ E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAG++ SIIE Sbjct: 240 VEIVGIKATAKTTVTGVEMFRKLLDQGQAGDNIGALIRGVGREDVERGQVLCKPGSVKPHTKFKAEAYILTKDEGGRHTPFFTNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDNVAMDVTLIVPIAMEEKLRFAIREGGRTVGAGIVSSIIE 391
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_OCEIH (Elongation factor Tu OS=Oceanobacillus iheyensis GN=tuf PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50 Identity = 101/156 (64.74%), Postives = 121/156 (77.56%), Query Frame = 3 Query: 6 VDLVGLKETRN-FTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 470 V+++GL E + TVTGVEMF+K LD A AGDN+G LLRGV + DI RG VLAKPG+ITPHT F A VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG + + E ++MVMPGD I+M VELI P+A E G RF+IREGG+TVG+GV+ SI Sbjct: 243 VEIIGLAEDASKTTVTGVEMFRKLLDYAEAGDNIGALLRGVSREDINRGQVLAKPGSITPHTNFKAEVYVLSKEEGGRHTPFFSNYRPQFYFRTTDVTGVI-----ELPEGTEMVMPGDNIEMTVELISPIAIEDGTRFSIREGGRTVGSGVVSSI 393
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_MESSB (Elongation factor Tu OS=Mesorhizobium sp. (strain BNC1) GN=tuf1 PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50 Identity = 95/157 (60.51%), Postives = 121/157 (77.07%), Query Frame = 3 Query: 6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476 V++VG++ T TVTGVEMF+K LD+ AGDN+G LLRG+ + ++RG VLAKPG++TPHTKF A Y+L KEEGGRH+PFF YRPQFY RTTDVTG V+ E ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAG++ SI E Sbjct: 240 VEIVGIRPTSKTTVTGVEMFRKLLDQGQAGDNIGALLRGIDREGVERGQVLAKPGSVTPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDNVTMDVTLIVPIAMEERLRFAIREGGRTVGAGIVASITE 391
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_GYMST (Elongation factor Tu, chloroplastic (Fragment) OS=Gymnochlora stellata GN=tufA PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50 Identity = 94/137 (68.61%), Postives = 119/137 (86.86%), Query Frame = 3 Query: 3 TVDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDE-ESKMVMPGDRIKMVVELIMPVACEQG 410 TV++VGLKETR+ TVTG++MFQK L E++AGDNVG+LLRG+QK DIQRGMV+A+PG+ITPH F A VYVL KEEGGRH+PF +GYRPQFY+RTTDVTG+V S+ +D+D+ E KMV+PGDR+ M VEL+ P+A E+G Sbjct: 227 TVEIVGLKETRSTTVTGLKMFQKMLQESIAGDNVGMLLRGIQKTDIQRGMVIAQPGSITPHVSFEAQVYVLTKEEGGRHTPFLSGYRPQFYVRTTDVTGKVESLKSDEDKSEMKMVVPGDRVTMSVELVQPIAIEKG 363
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_COLP3 (Elongation factor Tu OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tuf1 PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50 Identity = 95/156 (60.90%), Postives = 123/156 (78.85%), Query Frame = 3 Query: 6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473 V++VG+++T+ T TGVEMF+K LDE AG+N G+LLRG+++ D++RG VL PG+I PHTKF + VYVL K+EGGRH+PFF GYRPQFY RTTD+TG V + E +MVMPGD +K VVELI PVA ++G+RFAIREGG+TVGAGV+ I+ Sbjct: 243 VEVVGIRDTQKSTCTGVEMFRKLLDEGRAGENCGVLLRGLKREDVERGQVLCAPGSILPHTKFESEVYVLSKDEGGRHTPFFKGYRPQFYFRTTDITGAV-----ELPEGVEMVMPGDNLKFVVELINPVAMDEGLRFAIREGGRTVGAGVVSKIM 393
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_ACIAC (Elongation factor Tu OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=tuf1 PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 2.724e-50 Identity = 93/156 (59.62%), Postives = 121/156 (77.56%), Query Frame = 3 Query: 6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473 +++VG+++T+ T TGVEMF+K LD+ AGDNVGLLLRG ++ D++RG VL KPG+I PHT F A VYVL K+EGGRH+PFF YRPQFY RTTDVTG + + + +MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+ II Sbjct: 245 IEIVGIRDTQKTTCTGVEMFRKLLDQGQAGDNVGLLLRGTKREDVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAI-----ELPADKEMVMPGDNVSITVKLINPIAMEEGLRFAIREGGRTVGAGVVAKII 395 The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bpback to top |