DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_ECOLC (Elongation factor Tu 2 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_ECOL5 (Elongation factor Tu 2 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_ECOK1 (Elongation factor Tu 2 OS=Escherichia coli O1:K1 / APEC GN=tuf2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_ECOHS (Elongation factor Tu 2 OS=Escherichia coli O9:H4 (strain HS) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_ECO24 (Elongation factor Tu 2 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_SHISS (Elongation factor Tu 1 OS=Shigella sonnei (strain Ss046) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_SHIF8 (Elongation factor Tu 1 OS=Shigella flexneri serotype 5b (strain 8401) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVQMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_ECOUT (Elongation factor Tu 1 OS=Escherichia coli (strain UTI89 / UPEC) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_ECOLC (Elongation factor Tu 1 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
[Close]
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_ECOL5 (Elongation factor Tu 1 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3 
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU2_ECOLC1.000e-5263.46Elongation factor Tu 2 OS=Escherichia coli (strain... [more]
EFTU2_ECOL51.000e-5263.46Elongation factor Tu 2 OS=Escherichia coli O6:K15:... [more]
EFTU2_ECOK11.000e-5263.46Elongation factor Tu 2 OS=Escherichia coli O1:K1 /... [more]
EFTU2_ECOHS1.000e-5263.46Elongation factor Tu 2 OS=Escherichia coli O9:H4 (... [more]
EFTU2_ECO241.000e-5263.46Elongation factor Tu 2 OS=Escherichia coli O139:H2... [more]
EFTU1_SHISS1.000e-5263.46Elongation factor Tu 1 OS=Shigella sonnei (strain ... [more]
EFTU1_SHIF81.000e-5263.46Elongation factor Tu 1 OS=Shigella flexneri seroty... [more]
EFTU1_ECOUT1.000e-5263.46Elongation factor Tu 1 OS=Escherichia coli (strain... [more]
EFTU1_ECOLC1.000e-5263.46Elongation factor Tu 1 OS=Escherichia coli (strain... [more]
EFTU1_ECOL51.000e-5263.46Elongation factor Tu 1 OS=Escherichia coli O6:K15:... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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