DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_ECOK1 (Elongation factor Tu 1 OS=Escherichia coli O1:K1 / APEC GN=tuf1 PE=3 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_ECOHS (Elongation factor Tu 1 OS=Escherichia coli O9:H4 (strain HS) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_ECO24 (Elongation factor Tu 1 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.000e-52
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET+  T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_KLEP7 (Elongation factor Tu OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=tufA PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.307e-52
Identity = 99/156 (63.46%), Postives = 124/156 (79.49%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+KET   T TGVEMF+K LDE  AG+NVG+LLRG+++ +I+RG VLAKPGTI PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A + G+RFAIREGG+TVGAGV+  ++
Sbjct:  243 VEIVGIKETAKTTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTINPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_FLESI (Elongation factor Tu OS=Flexistipes sinusarabici GN=tuf PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.307e-52
Identity = 100/157 (63.69%), Postives = 123/157 (78.34%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL +TR   VTGVEMF+K LDE  AGDNVG+LLRG++K D++RG VLAKPG+ITPH KF    Y+L KEEGGRH+PFF+GYRPQFY RTTDVTG ++       E  +MVMPGD I   V+LI P+A EQG+RFAIREGG+TVGAGV+  I+E
Sbjct:  245 IEIVGLTDTRKTVVTGVEMFRKILDEGEAGDNVGVLLRGIKKDDVERGQVLAKPGSITPHRKFKCEAYILTKEEGGRHTPFFSGYRPQFYFRTTDVTGVITLA-----EGVEMVMPGDNISCDVDLIQPIAMEQGLRFAIREGGRTVGAGVVTEIVE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_DEIRA (Elongation factor Tu OS=Deinococcus radiodurans GN=tufA PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.307e-52
Identity = 101/157 (64.33%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VGL +TR  TVTG+EM +K LD  MAGDNVG+LLRGV + D++RG VLAKPG+I PHTKF A VYVL K+EGGRHS FF GYRPQFY RTTDVTG V     +  E  +MVMPGD +   VELI P+A E+G+RFAIREGG+TVGAGV+  ++E
Sbjct:  254 VEIVGLTDTRKTTVTGIEMHRKLLDSGMAGDNVGVLLRGVARDDVERGQVLAKPGSIKPHTKFEASVYVLSKDEGGRHSAFFGGYRPQFYFRTTDVTGVV-----ELQEGVEMVMPGDNVTFTVELIKPIAMEEGLRFAIREGGRTVGAGVVSKVLE 405          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_ARCB4 (Elongation factor Tu OS=Arcobacter butzleri (strain RM4018) GN=tuf PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.307e-52
Identity = 96/156 (61.54%), Postives = 124/156 (79.49%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            +++VG  +TR  TVTGVEMF+K +D+  AGDN G+LLRG++K D++RG VL KPGTITPHTKF   VY+L KEEGGRH+PFF+GYRPQFY+RTTDVTG  +       E ++MVMPGD ++M VEL+ P+A ++G +FAIREGG+TVGAGV+  II
Sbjct:  251 IEIVGFGDTRKTTVTGVEMFRKEMDQGQAGDNCGILLRGIKKEDVERGQVLVKPGTITPHTKFRCEVYILSKEEGGRHTPFFSGYRPQFYVRTTDVTGSCT-----LPEGTEMVMPGDNVEMTVELVAPIALDKGTKFAIREGGRTVGAGVVAEII 401          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_YERE8 (Elongation factor Tu 1 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.307e-52
Identity = 99/157 (63.06%), Postives = 125/157 (79.62%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VGLK+T   T TGVEMF+K LDE  AG+NVG+LLRG+++ DI+RG VLAKPG+I PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD I+M+V LI P+A + G+RFAIREGG+TVGAGV+  +IE
Sbjct:  243 VEIVGLKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVLAKPGSIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIQMIVNLIAPIAMDDGLRFAIREGGRTVGAGVVAKVIE 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_NITMU (Elongation factor Tu OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.706e-52
Identity = 98/157 (62.42%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGLK T     TGVEMF+K LD+  AGDNVG+LLRG ++ +++RG VLAKPGTITPHTKF A +YVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +    ++MVMPGD + + V LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 IEIVGLKPTTKTVCTGVEMFRKLLDQGQAGDNVGVLLRGTKREEVERGQVLAKPGTITPHTKFTAEIYVLSKEEGGRHTPFFQGYRPQFYFRTTDVTGAI-----ELPAGTEMVMPGDNVSVTVNLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_PASMU (Elongation factor Tu-B OS=Pasteurella multocida GN=tufB PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.706e-52
Identity = 102/157 (64.97%), Postives = 123/157 (78.34%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+K T   TVTGVEMF+K LDE  AG+NVG LLRG ++ +I+RG VLAKPG+ITPHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKM V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  243 VEIVGIKATTKTTVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIIK 394          
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_ECOK11.000e-5263.46Elongation factor Tu 1 OS=Escherichia coli O1:K1 /... [more]
EFTU1_ECOHS1.000e-5263.46Elongation factor Tu 1 OS=Escherichia coli O9:H4 (... [more]
EFTU1_ECO241.000e-5263.46Elongation factor Tu 1 OS=Escherichia coli O139:H2... [more]
EFTU_KLEP71.307e-5263.46Elongation factor Tu OS=Klebsiella pneumoniae subs... [more]
EFTU_FLESI1.307e-5263.69Elongation factor Tu OS=Flexistipes sinusarabici G... [more]
EFTU_DEIRA1.307e-5264.33Elongation factor Tu OS=Deinococcus radiodurans GN... [more]
EFTU_ARCB41.307e-5261.54Elongation factor Tu OS=Arcobacter butzleri (strai... [more]
EFTU1_YERE81.307e-5263.06Elongation factor Tu 1 OS=Yersinia enterocolitica ... [more]
EFTU_NITMU1.706e-5262.42Elongation factor Tu OS=Nitrosospira multiformis (... [more]
EFTU2_PASMU1.706e-5264.97Elongation factor Tu-B OS=Pasteurella multocida GN... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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