DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_YERP3 (Elongation factor Tu 1 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.203e-51
Identity = 97/157 (61.78%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+ +T   T TGVEMF+K LDE  AG+NVG+LLRG ++ D+QRG VLAKPG+I PHTKF + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD + MVV LI P+A + G+RFAIREGG+TVGAGV+  +IE
Sbjct:  243 VEIVGIIDTIKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDDVQRGQVLAKPGSIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVNMVVNLIAPIAMDDGLRFAIREGGRTVGAGVVAKVIE 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_THICR (Elongation factor Tu OS=Thiomicrospira crunogena (strain XCL-2) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.489e-51
Identity = 97/157 (61.78%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG++ T   TVTGVEMF+K LD+  AGDNVG+LLRG ++ DI+RG VLA  GT+TPHTKF A VYVL K+EGGRH+PFF GYRPQFY RTTDVTG       +    ++MVMPGD ++M VELI P+A  +G+RFAIREGG+TVGAGV+  II+
Sbjct:  245 IEIVGIRPTTTTTVTGVEMFRKLLDQGEAGDNVGILLRGTKREDIERGQVLAHKGTVTPHTKFEAEVYVLSKDEGGRHTPFFQGYRPQFYFRTTDVTGAC-----ELPAGTEMVMPGDNVQMTVELINPIAMNEGLRFAIREGGRTVGAGVVAKIID 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_THELT (Elongation factor Tu OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=tuf PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.489e-51
Identity = 100/158 (63.29%), Postives = 124/158 (78.48%), Query Frame = 3
Query:    6 VDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VGL  ETR   VT VEMF+K LDE +AGDNVG LLRG+ K +I+RG VLA PG+ITPHT F A VYVLKKEEGGRH+PF  GYRPQF++RT DVTG ++ + N+    ++MVMPGD   + ++LI PVA E+GMRFAIREGG+TVGAGV+  I+E
Sbjct:  246 VEIVGLSYETRKTVVTSVEMFRKELDEGLAGDNVGCLLRGIDKDEIERGQVLAAPGSITPHTTFKANVYVLKKEEGGRHTPFMKGYRPQFFIRTADVTGEITELGNN----AEMVMPGDNAILTIKLIYPVAIEKGMRFAIREGGRTVGAGVVAEIVE 399          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_STAAW (Elongation factor Tu OS=Staphylococcus aureus (strain MW2) GN=tuf PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.489e-51
Identity = 99/157 (63.06%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++GL +T   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQFY RTTDVTG V        E ++MVMPGD ++M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  243 VEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_STAAT (Elongation factor Tu OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=tuf PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.489e-51
Identity = 99/157 (63.06%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++GL +T   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQFY RTTDVTG V        E ++MVMPGD ++M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  243 VEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_STAAS (Elongation factor Tu OS=Staphylococcus aureus (strain MSSA476) GN=tuf PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.489e-51
Identity = 99/157 (63.06%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++GL +T   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQFY RTTDVTG V        E ++MVMPGD ++M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  243 VEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_STAAR (Elongation factor Tu OS=Staphylococcus aureus (strain MRSA252) GN=tuf PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.489e-51
Identity = 99/157 (63.06%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++GL +T   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQFY RTTDVTG V        E ++MVMPGD ++M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  243 VEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_STAAN (Elongation factor Tu OS=Staphylococcus aureus (strain N315) GN=tuf PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.489e-51
Identity = 99/157 (63.06%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++GL +T   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQFY RTTDVTG V        E ++MVMPGD ++M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  243 VEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_STAAM (Elongation factor Tu OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=tuf PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.489e-51
Identity = 99/157 (63.06%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++GL +T   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQFY RTTDVTG V        E ++MVMPGD ++M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  243 VEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_STAAE (Elongation factor Tu OS=Staphylococcus aureus (strain Newman) GN=tuf PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.489e-51
Identity = 99/157 (63.06%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++GL +T   TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLA PG+ITPHT+F A VYVL K+EGGRH+PFF+ YRPQFY RTTDVTG V        E ++MVMPGD ++M VELI P+A E G RF+IREGG+TVG+GV+  II+
Sbjct:  243 VEIIGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSITPHTEFKAEVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNVEMTVELIAPIAIEDGTRFSIREGGRTVGSGVVTEIIK 394          
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU1_YERP34.203e-5161.78Elongation factor Tu 1 OS=Yersinia pseudotuberculo... [more]
EFTU_THICR5.489e-5161.78Elongation factor Tu OS=Thiomicrospira crunogena (... [more]
EFTU_THELT5.489e-5163.29Elongation factor Tu OS=Thermotoga lettingae (stra... [more]
EFTU_STAAW5.489e-5163.06Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAAT5.489e-5163.06Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAAS5.489e-5163.06Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAAR5.489e-5163.06Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAAN5.489e-5163.06Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAAM5.489e-5163.06Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAAE5.489e-5163.06Elongation factor Tu OS=Staphylococcus aureus (str... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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