DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:509..1393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_CLOAB (Elongation factor Tu OS=Clostridium acetobutylicum GN=tuf PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.489e-51
Identity = 103/158 (65.19%), Postives = 121/158 (76.58%), Query Frame = 3
Query:    6 VDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+K E     VTGVEMF+K LD A+AGDN+G LLRGVQ+ DI+RG VLAKPG+ITPH KF+  VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG +        +  +MVMPGD I M VELI  VA    +RFAIREGG+TVG+GV+ SIIE
Sbjct:  245 VEIVGMKDEITKVVVTGVEMFRKILDSALAGDNIGALLRGVQREDIERGQVLAKPGSITPHNKFVGQVYVLKKEEGGRHTPFFNGYRPQFYFRTTDVTGSI-----QLPDGVEMVMPGDHIDMTVELITKVAMGDNLRFAIREGGRTVGSGVVTSIIE 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_PHOPR (Elongation factor Tu 2 OS=Photobacterium profundum GN=tuf2 PE=3 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 5.489e-51
Identity = 97/157 (61.78%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V ++G+KET   T TGVEMF+K LDE  AG+NVG+LLRG ++ D++RG VLAKPG+ITPHT F + +YVL K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD I+M V LI P+A ++G+RFAIREGG+TVGAGV+  I E
Sbjct:  243 VAIIGIKETTTTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDDVERGQVLAKPGSITPHTTFESEIYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIQMKVTLIAPIAMDEGLRFAIREGGRTVGAGVVAKIFE 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_TERTT (Elongation factor Tu OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=tuf PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.169e-51
Identity = 98/157 (62.42%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+  T   T TGVEMF+K LDE  AG+NVG+LLRG ++ +++RG VLAKPGTITPHT F + VYVL K+EGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD I+M V LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  256 IEIVGINATTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDEVERGQVLAKPGTITPHTVFQSEVYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGAC-----ELPEGVEMVMPGDNIQMTVTLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 407          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SULDN (Elongation factor Tu OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=tuf PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.169e-51
Identity = 92/156 (58.97%), Postives = 123/156 (78.85%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            +++VG+++T+  TVTG+EMF+K +D+ +AGDN G+L+RG+ K D++RG VL KPGTI PHTKF A +YVL KEEGGRH+PFF  YRPQFY+RTTDVTG +        E ++MVMPGD + + VELI P+A E+G +FAIREGG+TVGAGV+  I+
Sbjct:  248 IEIVGIRDTQKTTVTGIEMFRKEMDQGLAGDNCGVLVRGIGKDDVERGQVLCKPGTINPHTKFTAEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGAIY-----LPEGTEMVMPGDNVSITVELIHPIAMEKGTKFAIREGGRTVGAGVVAEIL 398          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SHEPU (Elongation factor Tu OS=Shewanella putrefaciens GN=tuf PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.169e-51
Identity = 98/156 (62.82%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG++ T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  243 VEIVGVRATTKTTCTGVEMFRKLLDEGRAGENCGILLRGTKRDDVERGQVLAKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SHEPC (Elongation factor Tu OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.169e-51
Identity = 98/156 (62.82%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG++ T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  243 VEIVGVRATTKTTCTGVEMFRKLLDEGRAGENCGILLRGTKRDDVERGQVLAKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_METPP (Elongation factor Tu OS=Methylibium petroleiphilum (strain PM1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.169e-51
Identity = 94/157 (59.87%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+  T+  T TGVEMF+K LD+  AGDNVG+LLRG ++ D+QRG VL KPG++ PHT F A +YVL KEEGGRH+PFF  YRPQFY RTTDVTG V     +  ++ +MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 IEIVGISATQKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVQRGQVLCKPGSVKPHTHFTAEIYVLSKEEGGRHTPFFNNYRPQFYFRTTDVTGAV-----ELPKDKEMVMPGDNVSITVKLINPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_MAGSA (Elongation factor Tu OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.169e-51
Identity = 97/157 (61.78%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+K T   T TGVEMF+K LD+  AGDN+G LLRG ++ D++RG VLA PG+ITPHT F A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD +KM+V LI P+A +QG+RFAIREGG+TVGAGV+  II+
Sbjct:  245 VEIVGIKNTVKTTCTGVEMFRKLLDQGEAGDNIGALLRGTKREDVERGQVLAAPGSITPHTDFEAEAYILNKEEGGRHTPFFTNYRPQFYFRTTDVTGVVA-----LPEGTEMVMPGDNVKMIVTLIAPIAMDQGLRFAIREGGRTVGAGVVAKIIK 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_FRAAA (Elongation factor Tu OS=Frankia alni (strain ACN14a) GN=tuf PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.169e-51
Identity = 99/159 (62.26%), Postives = 124/159 (77.99%), Query Frame = 3
Query:    3 TVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            TV++VG+K ET   TVTGVEMF+K LDE  AGDNVGLLLRG+++ D++RG V+ KP TITPHT F A VY+L K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD  +M VELI P+A E+G+RFAIREGG+TVGAG +  +++
Sbjct:  244 TVEIVGIKPETTTTTVTGVEMFRKLLDEGRAGDNVGLLLRGIKREDVERGQVIVKPKTITPHTVFEARVYILNKDEGGRHTPFFKNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDNTEMTVELIQPIAMEEGLRFAIREGGRTVGAGQVTKVLK 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_YERE8 (Elongation factor Tu 2 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.169e-51
Identity = 97/156 (62.18%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TGVEMF+K LDE  AG+NVG+LLRG+++ DI+RG VLAKPG+I PHT F + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD I MVV LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  243 VEIVGIKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVLAKPGSIKPHTTFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNINMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CLOAB5.489e-5165.19Elongation factor Tu OS=Clostridium acetobutylicum... [more]
EFTU2_PHOPR5.489e-5161.78Elongation factor Tu 2 OS=Photobacterium profundum... [more]
EFTU_TERTT7.169e-5162.42Elongation factor Tu OS=Teredinibacter turnerae (s... [more]
EFTU_SULDN7.169e-5158.97Elongation factor Tu OS=Sulfurimonas denitrificans... [more]
EFTU_SHEPU7.169e-5162.82Elongation factor Tu OS=Shewanella putrefaciens GN... [more]
EFTU_SHEPC7.169e-5162.82Elongation factor Tu OS=Shewanella putrefaciens (s... [more]
EFTU_METPP7.169e-5159.87Elongation factor Tu OS=Methylibium petroleiphilum... [more]
EFTU_MAGSA7.169e-5161.78Elongation factor Tu OS=Magnetospirillum magneticu... [more]
EFTU_FRAAA7.169e-5162.26Elongation factor Tu OS=Frankia alni (strain ACN14... [more]
EFTU2_YERE87.169e-5162.18Elongation factor Tu 2 OS=Yersinia enterocolitica ... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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