DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_ACISJ (Elongation factor Tu 2 OS=Acidovorax sp. (strain JS42) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.169e-51
Identity = 94/156 (60.26%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            +++VG+++T+  TVTGVEMF+K LD+  AGDNVGLLLRG ++ D++RG VL KPG+I PHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG +     +   + +MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  II
Sbjct:  245 IEIVGIRDTQKTTVTGVEMFRKLLDQGQAGDNVGLLLRGTKREDVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGSI-----ELPADKEMVMPGDNVSITVKLINPIAMEEGLRFAIREGGRTVGAGVVAKII 395          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_ACISJ (Elongation factor Tu 1 OS=Acidovorax sp. (strain JS42) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.169e-51
Identity = 94/156 (60.26%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            +++VG+++T+  TVTGVEMF+K LD+  AGDNVGLLLRG ++ D++RG VL KPG+I PHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG +     +   + +MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  II
Sbjct:  245 IEIVGIRDTQKTTVTGVEMFRKLLDQGQAGDNVGLLLRGTKREDVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGSI-----ELPADKEMVMPGDNVSITVKLINPIAMEEGLRFAIREGGRTVGAGVVAKII 395          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SHEB8 (Elongation factor Tu OS=Shewanella baltica (strain OS185) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.363e-51
Identity = 98/156 (62.82%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG++ T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VLAKPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  243 VEIVGVRTTTKTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLAKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_RALSO (Elongation factor Tu OS=Ralstonia solanacearum GN=tufA PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.363e-51
Identity = 97/157 (61.78%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+K T+  T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VL KPG+I PHT F   VY+L K+EGGRH+PFF  YRPQFY RTTDVTG   SI   KD+E  MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 IEIVGIKATQKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLCKPGSIKPHTHFTGEVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTG---SIELPKDKE--MVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_MYCGA (Elongation factor Tu OS=Mycoplasma gallisepticum GN=tuf PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.363e-51
Identity = 94/157 (59.87%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+ +TR   VTG+EMF+K LD AMAGDN G+LLRGV + D+QRG VLAKPG+ITPH KF A +Y LKK+EGGRH+ F  GYRPQFY RTTDVTG +        E ++MVMPGD  +++VELI  +ACE+G +F+IREGG+TVGAG +  ++E
Sbjct:  243 VEIVGITDTRKVVVTGIEMFRKELDAAMAGDNAGILLRGVDRKDVQRGQVLAKPGSITPHKKFRAEIYALKKDEGGRHTAFLNGYRPQFYFRTTDVTGSI-----QLKEGTEMVMPGDNTEIIVELISSIACEKGSKFSIREGGRTVGAGTVVEVLE 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_GEOTN (Elongation factor Tu OS=Geobacillus thermodenitrificans (strain NG80-2) GN=tuf PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.363e-51
Identity = 99/158 (62.66%), Postives = 125/158 (79.11%), Query Frame = 3
Query:    6 VDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++GL  E ++ TVTGVEMF+K LD+A AGDN+G LLRGV + +++RG VLAKPG+ITPHTKF A VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG ++       E  +MVMPGD ++M VELI P+A E+G +F+IREGG+TVGAG +  IIE
Sbjct:  243 VEIIGLSDEPKSTTVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEVERGQVLAKPGSITPHTKFKAQVYVLTKEEGGRHTPFFSNYRPQFYFRTTDVTGIIT-----LPEGVEMVMPGDNVEMTVELIAPIAIEEGTKFSIREGGRTVGAGSVSEIIE 395          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_GEOSW (Elongation factor Tu OS=Geobacillus sp. (strain WCH70) GN=tuf PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.363e-51
Identity = 100/158 (63.29%), Postives = 125/158 (79.11%), Query Frame = 3
Query:    6 VDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VGL  E ++ TVTGVEMF+K LD+A AGDN+G LLRGV + +++RG VLAKPG+ITPHTKF A VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG ++       E  +MVMPGD ++M VELI P+A E+G +F+IREGG+TVGAG +  IIE
Sbjct:  243 VEIVGLADEPKSTTVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEVERGQVLAKPGSITPHTKFKAQVYVLTKEEGGRHTPFFSNYRPQFYFRTTDVTGIIT-----LPEGVEMVMPGDNVEMTVELIAPIAIEEGTKFSIREGGRTVGAGSVSEIIE 395          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_YERPS (Elongation factor Tu 2 OS=Yersinia pseudotuberculosis GN=tuf2 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.363e-51
Identity = 96/156 (61.54%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TGVEMF+K LDE  AG+NVG+LLRG+++ DI+RG VLAKPG+I PHT F + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD I M+V LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  243 VEIVGIKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVLAKPGSIKPHTTFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNINMIVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_YERPN (Elongation factor Tu 2 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.363e-51
Identity = 96/156 (61.54%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TGVEMF+K LDE  AG+NVG+LLRG+++ DI+RG VLAKPG+I PHT F + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD I M+V LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  243 VEIVGIKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVLAKPGSIKPHTTFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNINMIVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_YERP3 (Elongation factor Tu 2 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.363e-51
Identity = 96/156 (61.54%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TGVEMF+K LDE  AG+NVG+LLRG+++ DI+RG VLAKPG+I PHT F + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD I M+V LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  243 VEIVGIKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVLAKPGSIKPHTTFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNINMIVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU2_ACISJ7.169e-5160.26Elongation factor Tu 2 OS=Acidovorax sp. (strain J... [more]
EFTU1_ACISJ7.169e-5160.26Elongation factor Tu 1 OS=Acidovorax sp. (strain J... [more]
EFTU_SHEB89.363e-5162.82Elongation factor Tu OS=Shewanella baltica (strain... [more]
EFTU_RALSO9.363e-5161.78Elongation factor Tu OS=Ralstonia solanacearum GN=... [more]
EFTU_MYCGA9.363e-5159.87Elongation factor Tu OS=Mycoplasma gallisepticum G... [more]
EFTU_GEOTN9.363e-5162.66Elongation factor Tu OS=Geobacillus thermodenitrif... [more]
EFTU_GEOSW9.363e-5163.29Elongation factor Tu OS=Geobacillus sp. (strain WC... [more]
EFTU2_YERPS9.363e-5161.54Elongation factor Tu 2 OS=Yersinia pseudotuberculo... [more]
EFTU2_YERPN9.363e-5161.54Elongation factor Tu 2 OS=Yersinia pestis bv. Anti... [more]
EFTU2_YERP39.363e-5161.54Elongation factor Tu 2 OS=Yersinia pseudotuberculo... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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