DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6850 contig Csv1_Contig6850:509..1393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_SHESM (Elongation factor Tu 2 OS=Shewanella sp. (strain MR-4) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.223e-50
Identity = 97/156 (62.18%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG++ T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VL+KPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  243 VEIVGIRTTTKTTCTGVEMFRKLLDEGRAGENCGILLRGTKRDDVERGQVLSKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_SHEON (Elongation factor Tu 2 OS=Shewanella oneidensis GN=tuf2 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.223e-50
Identity = 97/156 (62.18%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG++ T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VL+KPG+I PHT F + VYVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD IKMVV LI P+A ++G+RFAIREGG+TVGAGV+  II
Sbjct:  243 VEIVGIRTTTKTTCTGVEMFRKLLDEGRAGENCGILLRGTKRDDVERGQVLSKPGSINPHTTFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNIKMVVTLICPIAMDEGLRFAIREGGRTVGAGVVAKII 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_NITEC (Elongation factor Tu 1 OS=Nitrosomonas eutropha (strain C91) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.223e-50
Identity = 96/157 (61.15%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL+ T   T TGVEMF+K LD+  AGDNVG+LLRG ++ +++RG VLAKPG+I PHTKF A +YVL KEEGGRH+PFFAGYRPQFY RTTDVTG +     +     +MVMPGD I + V LI P+A  +G+RFAIREGG+TVGAGV+  +IE
Sbjct:  245 IEIVGLRPTIKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREEVERGQVLAKPGSILPHTKFSAEIYVLSKEEGGRHTPFFAGYRPQFYFRTTDVTGSI-----ELPAGVEMVMPGDNISVNVNLIAPIAMSEGLRFAIREGGRTVGAGVVAKVIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SYNFM (Elongation factor Tu OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.597e-50
Identity = 101/157 (64.33%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG + T     TGVEMF+KTLD+  AGDNVG+LLRG ++ +++RG V+AKPG+ITPHTKF A VYVLKKEEGGRH+PFF GYRPQFY RTTDVTG ++       E  +MVMPGD I   V LI PVA E+ +RFAIREGG+TVGAGVI  IIE
Sbjct:  246 VEIVGFRPTFKTVCTGVEMFRKTLDQGQAGDNVGVLLRGTKRDEVERGQVVAKPGSITPHTKFKAEVYVLKKEEGGRHTPFFPGYRPQFYFRTTDVTGIMT-----LPEGVEMVMPGDNISTEVHLITPVALEKELRFAIREGGRTVGAGVITEIIE 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SHEPA (Elongation factor Tu OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.597e-50
Identity = 94/156 (60.26%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TGVEMF+K LDE  AG+N G+LLRG+++ D++RG VLA PG+ITPHT F + +YVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD + M V LI P+A ++G+RFAIREGG+TVGAGV+  I+
Sbjct:  243 VEIVGIKDTTKSTCTGVEMFRKLLDEGRAGENCGVLLRGIKREDVERGQVLAAPGSITPHTTFKSEIYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVAMTVTLICPIAMDEGLRFAIREGGRTVGAGVVAEIV 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SHEHH (Elongation factor Tu OS=Shewanella halifaxensis (strain HAW-EB4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.597e-50
Identity = 94/156 (60.26%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TGVEMF+K LDE  AG+N G+LLRG+++ D++RG VLA PG+ITPHT F + +YVL KEEGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD + M V LI P+A ++G+RFAIREGG+TVGAGV+  I+
Sbjct:  243 VEIVGIKDTTKSTCTGVEMFRKLLDEGRAGENCGVLLRGIKREDVERGQVLAAPGSITPHTTFKSEIYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVAMTVTLIAPIAMDEGLRFAIREGGRTVGAGVVAEIV 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_PSEFS (Elongation factor Tu OS=Pseudomonas fluorescens (strain SBW25) GN=tuf PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.597e-50
Identity = 99/157 (63.06%), Postives = 120/157 (76.43%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL++T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VL KPG++ PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD IKMVV LI  +A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  246 LEIVGLRDTTVTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLVKPGSVKPHTKFEAEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIKMVVTLIKTIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_NITWN (Elongation factor Tu OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=tuf PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.597e-50
Identity = 95/157 (60.51%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG++ET+  TVTGVEMF+K LD+  AGDN+G LLRG ++ D++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V          ++MVMPGD + M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  245 IEIVGIRETQKTTVTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPAGTEMVMPGDNVAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_MACCJ (Elongation factor Tu OS=Macrococcus caseolyticus (strain JCSC5402) GN=tuf PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.597e-50
Identity = 104/158 (65.82%), Postives = 124/158 (78.48%), Query Frame = 3
Query:    6 VDLVGL-KETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++GL +E    TVTGVEMF+K LD A AGDN+G LLRGV + D+QRG VLAKPG+ITPHTKF A VYVL KEEGGRH+PFF  YRPQFY RTTDVTG V     +  E ++MVMPGD I+M VELI P+A E G RF+IREGG+TVG+GV+ S+IE
Sbjct:  243 VEIIGLTEEPSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVSREDVQRGQVLAKPGSITPHTKFKAEVYVLSKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----NLPEGTEMVMPGDNIEMNVELISPIAIEDGTRFSIREGGRTVGSGVV-SVIE 394          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_FRASC (Elongation factor Tu OS=Frankia sp. (strain CcI3) GN=tuf PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.597e-50
Identity = 98/159 (61.64%), Postives = 125/159 (78.62%), Query Frame = 3
Query:    3 TVDLVGLK-ETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            TV++VG+K ET + TVTGVEMF+K LDE  AGDNVGLLLRG+++ D++RG V+ KP +ITPHT F A VY+L K+EGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD  +M VELI P+A E+G+RFAIREGG+TVGAG +  +++
Sbjct:  244 TVEIVGIKPETTSTTVTGVEMFRKLLDEGRAGDNVGLLLRGIKREDVERGQVIVKPKSITPHTVFEARVYILNKDEGGRHTPFFKNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDNTEMTVELIQPIAMEEGLRFAIREGGRTVGAGQVTKVLK 397          
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU2_SHESM1.223e-5062.18Elongation factor Tu 2 OS=Shewanella sp. (strain M... [more]
EFTU2_SHEON1.223e-5062.18Elongation factor Tu 2 OS=Shewanella oneidensis GN... [more]
EFTU1_NITEC1.223e-5061.15Elongation factor Tu 1 OS=Nitrosomonas eutropha (s... [more]
EFTU_SYNFM1.597e-5064.33Elongation factor Tu OS=Syntrophobacter fumaroxida... [more]
EFTU_SHEPA1.597e-5060.26Elongation factor Tu OS=Shewanella pealeana (strai... [more]
EFTU_SHEHH1.597e-5060.26Elongation factor Tu OS=Shewanella halifaxensis (s... [more]
EFTU_PSEFS1.597e-5063.06Elongation factor Tu OS=Pseudomonas fluorescens (s... [more]
EFTU_NITWN1.597e-5060.51Elongation factor Tu OS=Nitrobacter winogradskyi (... [more]
EFTU_MACCJ1.597e-5065.82Elongation factor Tu OS=Macrococcus caseolyticus (... [more]
EFTU_FRASC1.597e-5061.64Elongation factor Tu OS=Frankia sp. (strain CcI3) ... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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