DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_DESVV (Elongation factor Tu OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tuf PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.597e-50
Identity = 97/157 (61.78%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+K+T   T TGVEMF+K LD+  AGDN+G LLRGV++ D++RG VLA P +ITPH KF A VYVL KEEGGRH+PFF+GYRPQFY RTTD+TG ++      +E  +MVMPGD     VELI P+A E G+RFAIREGG+TVGAGV+  I+E
Sbjct:  246 VEIVGIKDTTKSTCTGVEMFRKLLDQGQAGDNIGALLRGVKRDDVERGQVLAAPKSITPHRKFKAEVYVLSKEEGGRHTPFFSGYRPQFYFRTTDITGVIT-----LEEGVEMVMPGDNATFNVELIAPIAMELGLRFAIREGGRTVGAGVVSEIVE 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_DESVH (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tuf PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.597e-50
Identity = 97/157 (61.78%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+K+T   T TGVEMF+K LD+  AGDN+G LLRGV++ D++RG VLA P +ITPH KF A VYVL KEEGGRH+PFF+GYRPQFY RTTD+TG ++      +E  +MVMPGD     VELI P+A E G+RFAIREGG+TVGAGV+  I+E
Sbjct:  246 VEIVGIKDTTKSTCTGVEMFRKLLDQGQAGDNIGALLRGVKRDDVERGQVLAAPKSITPHRKFKAEVYVLSKEEGGRHTPFFSGYRPQFYFRTTDITGVIT-----LEEGVEMVMPGDNATFNVELIAPIAMELGLRFAIREGGRTVGAGVVSEIVE 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_BACP2 (Elongation factor Tu OS=Bacillus pumilus (strain SAFR-032) GN=tuf PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.597e-50
Identity = 103/158 (65.19%), Postives = 123/158 (77.85%), Query Frame = 3
Query:    6 VDLVGLKETRN-FTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V+++GL+E     TVTGVEMF+K LD A AGDN+G LLRGV + DIQRG VLAKPGTITPH++F A VYVL KEEGGRH+PFFA YRPQFY RTTDVTG V        E ++MVMPGD  +M VELI  +A E+G RF+IREGG+TVG+GV+ SII+
Sbjct:  244 VEIIGLQEENGKTTVTGVEMFRKLLDYAEAGDNIGALLRGVSREDIQRGQVLAKPGTITPHSRFKAEVYVLSKEEGGRHTPFFANYRPQFYFRTTDVTGIV-----HLPEGTEMVMPGDNTEMEVELISTIAIEEGTRFSIREGGRTVGSGVVSSIIK 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_DESPS (Elongation factor Tu 1 OS=Desulfotalea psychrophila GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.597e-50
Identity = 100/156 (64.10%), Postives = 120/156 (76.92%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V +VG+++T   T TGVEMF+K LDE  AGDN+G LLRGV++ DI+RG VLAKPGTITPHTKF A  Y+L K+EGGRH+PFF GYRPQFY RTTDVTG V+       E  +MVMPGD + +  ELI P+A + G+RFAIREGG+TVGAGVI  II
Sbjct:  245 VAIVGVRDTVKTTCTGVEMFRKLLDEGRAGDNIGALLRGVKREDIERGQVLAKPGTITPHTKFKAECYILGKDEGGRHTPFFNGYRPQFYFRTTDVTGIVT-----LPEGIEMVMPGDNVAVEAELITPIAMDAGLRFAIREGGRTVGAGVISEII 395          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_TREDE (Elongation factor Tu OS=Treponema denticola GN=tuf PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 95/157 (60.51%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+K T+   VTG+EMF K LDE  AGDNVGLLLRG++K +++RG VLAKPG+I PHTKF A +YVL KEEGGRHSPFF+GYRPQFY RTTD+TG V     +  E + MV PGD  K++ ELI P+A +QG++ AIREGG+T+ +G + +IIE
Sbjct:  244 VEIVGIKPTKKTVVTGIEMFNKLLDEGEAGDNVGLLLRGIEKKEVERGQVLAKPGSIHPHTKFEAQIYVLSKEEGGRHSPFFSGYRPQFYFRTTDITGTV-----NLPEGTDMVKPGDNTKIIGELIHPIAMDQGLKLAIREGGRTIASGQVTNIIE 395          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_THICU (Elongation factor Tu OS=Thiobacillus cuprinus GN=tuf PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 94/157 (59.87%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGLK T   T TGVEMF+K LD+  AGDNVG+LLRG ++ +++RG VL KPG+I PHT F A VYVL K+EGGRH+PFF  YRPQFY RTTDVTG +     +  ++ +MVMPGD + + V+LI P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 IEIVGLKPTLKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREEVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGAI-----ELPKDKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_SPHAL (Elongation factor Tu OS=Sphingopyxis alaskensis GN=tuf PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 93/155 (60.00%), Postives = 124/155 (80.00%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 470
            V++VG+K+T+   VTGVEMF+K LD+  AGDN+G L+RGV + +++RG VLAKPG+ITPHT+F + VYVL K+EGGRH+PFFA YRPQFY RTTDVTG V        E ++MVMPGD +++ V+LI P+A + G+RFAIREGG+TVGAGV+ ++
Sbjct:  246 VEIVGIKDTKKTVVTGVEMFRKLLDQGQAGDNIGALIRGVGREEVERGQVLAKPGSITPHTEFTSEVYVLSKDEGGRHTPFFANYRPQFYFRTTDVTGEVI-----LPEGTEMVMPGDNVQLSVKLIAPIAMDPGLRFAIREGGRTVGAGVVATV 395          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_RUBXD (Elongation factor Tu OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 95/157 (60.51%), Postives = 123/157 (78.34%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG++ TR   VTG+EMF K++ EA AGDN+G+LLRG+++ +I+RG VLA PG+ITPHT+F A VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG +       +E  +MVMPGD   M V+LI P+A ++G+ FAIREGG+TVGAGV+  IIE
Sbjct:  249 VEIVGIRPTRKTVVTGIEMFNKSMQEAQAGDNIGVLLRGIKRDEIERGQVLAAPGSITPHTRFKAEVYVLSKEEGGRHTPFFSHYRPQFYFRTTDVTGEIF-----LEEGVEMVMPGDNTVMEVQLISPIAMDEGLNFAIREGGRTVGAGVVTQIIE 400          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_RHOP2 (Elongation factor Tu OS=Rhodopseudomonas palustris (strain HaA2) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 95/157 (60.51%), Postives = 121/157 (77.07%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+++T+  T TGVEMF+K LD+  AGDN+G LLRG ++ D++RG VL KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V        E ++MVMPGD I M V LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  245 IEIVGIRDTQKTTCTGVEMFRKLLDQGQAGDNIGCLLRGTKREDVERGQVLCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVV-----HLPEGTEMVMPGDNIAMEVHLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_ERYLH (Elongation factor Tu OS=Erythrobacter litoralis (strain HTCC2594) GN=tuf PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.086e-50
Identity = 95/155 (61.29%), Postives = 122/155 (78.71%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 470
            V++VG+K+T   TVTGVEMF+K LD   AGDN+G L+RGV + D++RG VLAKPG++TPHT+F A VYVL K+EGGRH+PFFA YRPQFY RTTDVTG V        E ++MVMPGD + + V+LI P+A ++G+RFAIREGG+TVG+GV+  I
Sbjct:  245 VEIVGIKDTTKTTVTGVEMFRKLLDRGEAGDNIGALIRGVGREDVERGQVLAKPGSVTPHTEFSAEVYVLSKDEGGRHTPFFANYRPQFYFRTTDVTGEVI-----LPEGTEMVMPGDNVTINVKLIAPIAMDEGLRFAIREGGRTVGSGVVSKI 394          
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_DESVV1.597e-5061.78Elongation factor Tu OS=Desulfovibrio vulgaris sub... [more]
EFTU_DESVH1.597e-5061.78Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]
EFTU_BACP21.597e-5065.19Elongation factor Tu OS=Bacillus pumilus (strain S... [more]
EFTU1_DESPS1.597e-5064.10Elongation factor Tu 1 OS=Desulfotalea psychrophil... [more]
EFTU_TREDE2.086e-5060.51Elongation factor Tu OS=Treponema denticola GN=tuf... [more]
EFTU_THICU2.086e-5059.87Elongation factor Tu OS=Thiobacillus cuprinus GN=t... [more]
EFTU_SPHAL2.086e-5060.00Elongation factor Tu OS=Sphingopyxis alaskensis GN... [more]
EFTU_RUBXD2.086e-5060.51Elongation factor Tu OS=Rubrobacter xylanophilus (... [more]
EFTU_RHOP22.086e-5060.51Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_ERYLH2.086e-5061.29Elongation factor Tu OS=Erythrobacter litoralis (s... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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