DC900270

Overview
NameDC900270
Unique NameDC900270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_PSEP1 (Elongation factor Tu OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.558e-50
Identity = 97/157 (61.78%), Postives = 119/157 (75.80%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL++T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VL KPG++ PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD I+M V LI  +A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  246 LEIVGLRDTTTTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLVKPGSVKPHTKFTAEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIQMTVTLIKTIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_PSEE4 (Elongation factor Tu OS=Pseudomonas entomophila (strain L48) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.558e-50
Identity = 97/157 (61.78%), Postives = 119/157 (75.80%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL++T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VL KPG++ PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD I+M V LI  +A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  246 LEIVGLRDTTTTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLVKPGSVKPHTKFTAEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIQMTVTLIKTIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_LYSSC (Elongation factor Tu OS=Lysinibacillus sphaericus (strain C3-41) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.558e-50
Identity = 100/156 (64.10%), Postives = 124/156 (79.49%), Query Frame = 3
Query:    6 VDLVGL-KETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSI 470
            V+++G+ +E ++ TVTGVEMF+K LD A AGDN+G LLRGV + +IQRG VLAKPG+ITPHT F A VYVL KEEGGRH+PFF+ YRPQFY RTTDVTG     + +  E  +MVMPGD I+M VELI P+A E+G +F+IREGG+TVGAGV+ SI
Sbjct:  243 VEIIGIAEEAKSTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREEIQRGQVLAKPGSITPHTNFKAEVYVLSKEEGGRHTPFFSNYRPQFYFRTTDVTG-----ICNLPEGVEMVMPGDNIEMTVELIAPIALEEGTKFSIREGGRTVGAGVVASI 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_LEPBP (Elongation factor Tu OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.558e-50
Identity = 94/157 (59.87%), Postives = 123/157 (78.34%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+++T    VTG+EMF+K LD+A AGDN+G LLRG +K DI+RG VLAKPGTITPH KF A VYVL K+EGGRH+PFF  YRPQFY RTTD+TG V ++    +    MVMPGD + M +ELI P+A +QG++FAIREGG+T+G+GV+  I+E
Sbjct:  250 IEIVGIRDTTKSVVTGIEMFRKLLDQAEAGDNIGALLRGTKKEDIERGQVLAKPGTITPHRKFKAEVYVLTKDEGGRHTPFFNNYRPQFYFRTTDITG-VCNLPGGME----MVMPGDNVTMSIELIHPIAMDQGLKFAIREGGRTIGSGVVAEIVE 401          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_LEPBA (Elongation factor Tu OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=tuf PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.558e-50
Identity = 94/157 (59.87%), Postives = 123/157 (78.34%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VG+++T    VTG+EMF+K LD+A AGDN+G LLRG +K DI+RG VLAKPGTITPH KF A VYVL K+EGGRH+PFF  YRPQFY RTTD+TG V ++    +    MVMPGD + M +ELI P+A +QG++FAIREGG+T+G+GV+  I+E
Sbjct:  250 IEIVGIRDTTKSVVTGIEMFRKLLDQAEAGDNIGALLRGTKKEDIERGQVLAKPGTITPHRKFKAEVYVLTKDEGGRHTPFFNNYRPQFYFRTTDITG-VCNLPGGME----MVMPGDNVTMSIELIHPIAMDQGLKFAIREGGRTIGSGVVAEIVE 401          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_AZOSE (Elongation factor Tu OS=Azoarcus sp. (strain EbN1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.558e-50
Identity = 95/157 (60.51%), Postives = 120/157 (76.43%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG+K T   T TGVEMF+K LD+  AGDNVG+LLRG ++ D++RG VL KPG+I PHT F   VYVL KEEGGRH+PFF  YRPQFY RTTDVTG +     +  E ++MVMPGD + + V+L+ P+A E+G+RFAIREGG+TVGAGV+  IIE
Sbjct:  245 VEIVGIKATVKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLCKPGSIKPHTHFTGEVYVLSKEEGGRHTPFFNNYRPQFYFRTTDVTGSI-----ELPEGTEMVMPGDNVSITVKLMAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU_AZOC5 (Elongation factor Tu OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.558e-50
Identity = 95/157 (60.51%), Postives = 123/157 (78.34%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            V++VG++ T   TVTG+EMF+K LD+  AGDNVG+LLRG ++ D++RG V+ KPG++ PHTKF A  Y+L KEEGGRH+PFF  YRPQFY RTTDVTG V+       E ++MVMPGD I + V+LI+P+A E+ +RFAIREGG+TVGAGV+ SIIE
Sbjct:  246 VEIVGIRPTVKTTVTGIEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVVCKPGSVKPHTKFKAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVT-----LPEGTEMVMPGDNISVDVQLIVPIAMEEKLRFAIREGGRTVGAGVVASIIE 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU2_PSEPK (Elongation factor Tu-B OS=Pseudomonas putida (strain KT2440) GN=tufB PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.558e-50
Identity = 97/157 (61.78%), Postives = 119/157 (75.80%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL++T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VL KPG++ PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD I+M V LI  +A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  246 LEIVGLRDTTTTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLVKPGSVKPHTKFTAEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIQMTVTLIKTIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_SERP5 (Elongation factor Tu 1 OS=Serratia proteamaculans (strain 568) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.558e-50
Identity = 95/156 (60.90%), Postives = 122/156 (78.21%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSII 473
            V++VG+K+T   T TGVEMF+K LDE  AG+NVG+LLRG+++ DI+RG VLAKPG+I PHT+F + VY+L K+EGGRH+PFF GYRPQFY RTTDVTG +     +  E  +MVMPGD + M V LI P+A + G+RFAIREGG+TVGAGV+  +I
Sbjct:  243 VEIVGIKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVLAKPGSIKPHTQFDSEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI-----ELPEGVEMVMPGDNVNMKVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVI 393          
BLAST of DC900270 vs. ExPASy Swiss-Prot
Match: EFTU1_PSEPK (Elongation factor Tu-A OS=Pseudomonas putida (strain KT2440) GN=tufA PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.558e-50
Identity = 97/157 (61.78%), Postives = 119/157 (75.80%), Query Frame = 3
Query:    6 VDLVGLKETRNFTVTGVEMFQKTLDEAMAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGRVSSIMNDKDEESKMVMPGDRIKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 476
            +++VGL++T   T TGVEMF+K LDE  AG+N G+LLRG ++ D++RG VL KPG++ PHTKF A VYVL KEEGGRH+PFF GYRPQFY RTTDVTG       +  E  +MVMPGD I+M V LI  +A E G+RFAIREGG+TVGAGV+  IIE
Sbjct:  246 LEIVGLRDTTTTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLVKPGSVKPHTKFTAEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNC-----ELPEGVEMVMPGDNIQMTVTLIKTIAMEDGLRFAIREGGRTVGAGVVAKIIE 397          
The following BLAST results are available for this feature:
BLAST of DC900270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PSEP13.558e-5061.78Elongation factor Tu OS=Pseudomonas putida (strain... [more]
EFTU_PSEE43.558e-5061.78Elongation factor Tu OS=Pseudomonas entomophila (s... [more]
EFTU_LYSSC3.558e-5064.10Elongation factor Tu OS=Lysinibacillus sphaericus ... [more]
EFTU_LEPBP3.558e-5059.87Elongation factor Tu OS=Leptospira biflexa serovar... [more]
EFTU_LEPBA3.558e-5059.87Elongation factor Tu OS=Leptospira biflexa serovar... [more]
EFTU_AZOSE3.558e-5060.51Elongation factor Tu OS=Azoarcus sp. (strain EbN1)... [more]
EFTU_AZOC53.558e-5060.51Elongation factor Tu OS=Azorhizobium caulinodans (... [more]
EFTU2_PSEPK3.558e-5061.78Elongation factor Tu-B OS=Pseudomonas putida (stra... [more]
EFTU1_SERP53.558e-5060.90Elongation factor Tu 1 OS=Serratia proteamaculans ... [more]
EFTU1_PSEPK3.558e-5061.78Elongation factor Tu-A OS=Pseudomonas putida (stra... [more]

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Properties
Property NameValue
Genbank descriptionDC900270 VSS Citrus sinensis cDNA clone VS28614 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900270 ID=DC900270; Name=DC900270; organism=Citrus sinensis; type=EST; length=885bp
AGACTGTTGATCTTGTGGGATTGAAGGAAACTAGGAATTTCACTGTAACT
GGGGTTGAAATGTTTCAAAAGACTCTAGACGAGGCAATGGCTGGGGATAA
TGTCGGGTTGTTACTTAGAGGTGTACAAAAGGCTGATATTCAGAGAGGGA
TGGTGTTGGCCAAGCCCGGAACAATTACTCCCCATACTAAGTTCCTTGCC
ATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGTAGGCACTCACCTTTCTT
TGCGGGTTACAGGCCTCAATTTTACATGAGGACCACTGATGTGACTGGAA
GGGTGTCTTCTATTATGAACGACAAGGACGAGGAGTCCAAGATGGTTATG
CCTGGTGACCGTATCAAGATGGTTGTGGAGCTTATTATGCCAGTGGCTTG
TGAGCAAGGGATGAGATTTGCCATCAGAGAAGGAGGAAAGACTGTTGGAG
CTGGTGTTATTCAGTCCATCATTGAATGATAGTACTAGGAACTTTCATGG
GCAGTGGATTATCTTTTACTTTTTTGAGCGGTGTTAAACTTCATATTCTT
AAGTTTTTATGGAATTAGTTTCACCATTCTAGGAACTTCCAGAACCTAAT
GTCATATAATTTGCAGTTTTGTTCTTATTTTGCATTGAACTCATGTCAAG
TCTAGTTGGAAAATGTTCATGTGATAATTCAATATGACTCACTTTTCCTC
AGTTGCTTCAGCTAATGTTGATTTGCCTGTGGTCAATATTTCAACATAAG
AAAGAAAAAGTTCTGGTATGTCTGATGGTGCTTATCAGCAACTTGTTATT
GTTTTCTAACTATGTTGAATATTGATAAAATATTTGTGGTTGGGTGCTCC
TTTTAGTTCAACCCAACTTATATTCATGGTTGAAT
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