CX043559

Overview
NameCX043559
Unique NameCX043559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig260 contig Csv1_Contig260:279..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 47/141 (33.33%), Postives = 71/141 (50.35%), Query Frame = 2
Query:   11 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVR--PLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 427
            P+D+DEA+ RRL +R+ + LPD  +R+ +I + L   E+ASDV++E +A   +GYSG DL N+C  A+                      R      S  D+   P+ M DF+ A  +V  SVSS     +E  +W   +G
Sbjct:  393 PWDIDEALRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDAS----------MNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIRKVQPSVSSSDIEKHE--KWLSEFG 521          
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus GN=Atad1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 42/129 (32.56%), Postives = 62/129 (48.06%), Query Frame = 2
Query:    8 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNM 394
            RP DLD A++RR+P R  +N P    RE I+++IL  E +   VDL  +A   DG+SGSDLK +C  AA                     N  S   +   ++RP++  D   A E++  S  +   N+
Sbjct:  239 RPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAA-------------LLCVREYVNSTSEESHDEDEIRPVQQQDLHRAIEKMKKSKDAAFQNV 354          
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens GN=ATAD1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 42/129 (32.56%), Postives = 62/129 (48.06%), Query Frame = 2
Query:    8 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNM 394
            RP DLD A++RR+P R  +N P    RE I+++IL  E +   VDL  +A   DG+SGSDLK +C  AA                     N  S   +   ++RP++  D   A E++  S  +   N+
Sbjct:  239 RPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAA-------------LLCVREYVNSTSEESHDEDEIRPVQQQDLHRAIEKMKKSKDAAFQNV 354          
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 2
Query:    8 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 214
            RP DLD A++RR+P R  +N P+   R+ I+++IL  E + S V+L  IA   DG+SGSDL+ +C  AA
Sbjct:  243 RPQDLDSAILRRMPTRFHINQPNVRQRKDILKLILENENVESAVELSEIAKQTDGFSGSDLREMCRDAA 311          
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 40/118 (33.90%), Postives = 58/118 (49.15%), Query Frame = 2
Query:    8 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQV 361
            RP DLD A++RR+P R  +N P    RE I+++IL  E +   VDL  +A   DG+SGSDLK +C  AA                     N  S   +   ++RP++  D   A E++
Sbjct:  239 RPQDLDSAIMRRMPTRFHINQPALKQREAILKLILKNENVDRHVDLLEVAQETDGFSGSDLKEMCRDAA-------------LLCVREYVNSTSEESHDEDEIRPVQQQDLHRAIEKM 343          
BLAST of CX043559 vs. ExPASy Swiss-Prot
Match: FIGL1_DROME (Fidgetin-like protein 1 OS=Drosophila melanogaster GN=CG3326 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 51/144 (35.42%), Postives = 68/144 (47.22%), Query Frame = 2
Query:    8 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV-DLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPL---KMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 427
            RP +LDEAV RR  RRL V LP    R+KII  ++ + +   DV  +  +A + DGYSG+D+  LC  A+  P                     +P     ++   L    MDDFK A   +  SVSSE     E   WNE+YG
Sbjct:  396 RPQELDEAVRRRFVRRLYVPLPTREARQKIIEKLIHQVKHNLDVRQVIELAELTDGYSGADVDTLCRYASMAP-----------------LRSLTPDQMEVIETHQLPAVTMDDFKQALRVISKSVSSEDCKQFE--AWNEIYG 520          
The following BLAST results are available for this feature:
BLAST of CX043559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
KTNA1_ARATH2.038e-1133.33Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
ATAD1_MOUSE2.038e-1132.56ATPase family AAA domain-containing protein 1 OS=M... [more]
ATAD1_HUMAN2.038e-1132.56ATPase family AAA domain-containing protein 1 OS=H... [more]
ATD1B_DANRE2.661e-1146.38ATPase family AAA domain-containing protein 1-B OS... [more]
ATAD1_RAT3.475e-1133.90ATPase family AAA domain-containing protein 1 OS=R... [more]
FIGL1_DROME4.539e-1135.42Fidgetin-like protein 1 OS=Drosophila melanogaster... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_11H07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11H07-O13-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043559 ID=CX043559; Name=CX043559; organism=Citrus sinensis; type=EST; length=670bp
CCCCCCTAGGCCTTTTGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCAA
GGAGATTGATGGTTAACTTGCCAGATGCCCCAAACAGAGAAAAGATTATA
AGAGTTATCTTGGCCAAAGAAGAATTGGCATCTGATGTGGATTTGGAAGG
AATTGCAAACATGGCTGATGGGTACTCTGGAAGTGATCTAAAGAACCTGT
GTGTGACTGCCGCACATTGTCCCATACGGGAAATTTTGGAGAAGGAAAAG
AAGGAGAGAGCTTTAGCATTGGCCGAGAATAGAGCTTCACCTCCATTGTA
CAGCAGCGTCGACGTTCGCCCTCTGAAGATGGACGATTTCAAATATGCAC
ATGAGCAGGTGTGTGCAAGTGTATCATCAGAGTCTACAAATATGAATGAG
CTCCTTCAATGGAATGAACTATATGGAGAAGGTGGATCGAGGAAAAGGAA
ATCTCTGAGCTACTTTATGTAGAGGTGGTATCTCTTTTGTATAGCATTCT
TGTGTGGTTTATTCGTCTTTATCATCCTAAATGATGGCCAAGATCAGGGA
CCTGTATTTATGGAGAATTCTGTTGGGCTGTCCCTTTTTCATTGTAATAT
ATATAGGTTTTGGAAGCTTTTACCCTTTTGTTAGGAATTCTTTTTTATAT
TCATCAAGCAGGTTAACTTA
back to top