CX043529

Overview
NameCX043529
Unique NameCX043529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043529 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.016e-64
Identity = 119/145 (82.07%), Postives = 132/145 (91.03%), Query Frame = 2
Query:  266 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAA 700
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  LLGL PSVKR+MMY QGCFAGGTVLRLAKDLAENNK ARVL+VCSE TAVTFRGP++T +DSLVGQALF DGAAA
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAA 145          
BLAST of CX043529 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.840e-60
Identity = 112/117 (95.73%), Postives = 115/117 (98.29%), Query Frame = 2
Query:  350 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAA 700
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALFGDGAAA
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAA 117          
BLAST of CX043529 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.192e-46
Identity = 92/98 (93.88%), Postives = 95/98 (96.94%), Query Frame = 2
Query:  407 ITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAA 700
            ITHLI CTTS VDMPGADYQLTKLLGLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE+TAVTFRGP+DTHLDSLVGQALFGDGAAA
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAA 97          
BLAST of CX043529 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.364e-29
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 2
Query:  509 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAA 700
            MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGP+DTHLDSLVGQALFGDGAAA
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAA 64          
BLAST of CX043529 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 66/214 (30.84%), Postives = 112/214 (52.34%), Query Frame = 2
Query:   59 RNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAA 700
            R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  LLGL   V+R  +   GC AG + LR A  LA+ +   R+LVVC+E+ ++ F        D +V  ++F DG+AA
Sbjct: 2778 RLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFSNTDGG--DQMVASSIFADGSAA 2985          
BLAST of CX043529 vs. ExPASy Swiss-Prot
Match: BCSA_BACSU (Putative chalcone synthase OS=Bacillus subtilis GN=bcsA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 61/213 (28.64%), Postives = 101/213 (47.42%), Query Frame = 2
Query:   86 ATVLAIGTATPAHSVNQ---ADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIK--EWGQ---PKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAA 700
            A +L+IGT+ PA++VNQ   A++  Y F+ +  + +  L   FK       I  R      E  KE          S + +  I + E  K  + A  + +   E+ Q   P  K+  + F +++G+  P  + +L   L   P  KR  ++  GC  G + L  A +  +    A VLV+ +E+ ++TF+ P D    +L+G +LFGDG AA
Sbjct:    2 AFILSIGTSLPAYNVNQEKAAEFARYMFQHSFKD-IDRLLSSFKN----GQIHSRQFVKPIEWYKEGH--------SFEEKNQIYIEETLKHSRAAVRECLSHPEFFQEAIPYEKVEAVFFVSSTGLSTPSIEARLMNELPFSPYTKRIPIWGLGCAGGASGLARAAEYCKAYPEAFVLVISAELCSLTFQ-PEDKTKSNLIGTSLFGDGIAA 200          
The following BLAST results are available for this feature:
BLAST of CX043529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
THS2_ARAHY1.016e-6482.07Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA9.840e-6095.73Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA6.192e-4693.88Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO2.364e-2998.44Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI1.641e-2230.84Probable polyketide synthase 1 OS=Dictyostelium di... [more]
BCSA_BACSU2.626e-1228.64Putative chalcone synthase OS=Bacillus subtilis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11F09_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11F09-K17-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043529 ID=CX043529; Name=CX043529; organism=Citrus sinensis; type=EST; length=702bp
GAGCCTCAAAACATATTCATTACGGGTTTAACTTGCAATGGCAACCGTTC
AAGAGATCAGAAACGCTCAGCGTGCCGACGGCCCGGCCACCGTCCTCGCC
ATCGGTACGGCCACGCCTGCCCACAGTGTCAACCAGGCTGATTATCCCGA
CTATTACTTCAGGATCACAAAGAGCGAGCATATGACGGAGCTTAAAGAGA
AGTTCAAGCGCATGTGTGACAAGTCAATGATTAAGAAGCGTTACATGTAC
TTAACGGAAGAGATTTTGAAGGAAAATCCCAACATGTGCGCTTACATGGC
TCCATCACTCGACGCACGTCAAGACATTGTGGTGGTCGAAGTGCCGAAGC
TCGGGAAAGAAGCTGCTACAAAGGCCATCAAAGAATGGGGCCAGCCCAAG
TCTAAGATCACCCACCTCATCTTCTGCACCACCTCCGGCGTCGACATGCC
CGGCGCCGACTACCAGCTCACCAAACTGCTCGGCCTGCGCCCTTCCGTCA
AGCGCTTCATGATGTACCAACAAGGATGTTTCGCCGGCGGCACTGTTCTT
CGCCTCGCTAAAGACTTGGCTGAGAACAACAAGGGCGCTCGCGTTCTTGT
TGTCTGTTCGGAGATCACGGCGGTCACTTTCCGCGGCCCTGCCGATACTC
ATCTTGATTCTCTTGTGGGCCAGGCTTTGTTCGGTGATGGTGCTGCTGCT
GT
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