DC900252

Overview
NameDC900252
Unique NameDC900252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COF2_PIG (Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4)

HSP 1 Score: 86.6557 bits (213), Expect = 1.734e-16
Identity = 55/152 (36.18%), Postives = 87/152 (57.24%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 459
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q+IVE+     +G+   T ED    F   LP  +CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++  GI+ E Q       GLD  KDR+
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COF2_MOUSE (Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.734e-16
Identity = 55/152 (36.18%), Postives = 87/152 (57.24%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 459
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q+IVE+     +G+   T ED    F   LP  +CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++  GI+ E Q       GLD  KDR+
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COF2_HUMAN (Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.734e-16
Identity = 55/152 (36.18%), Postives = 87/152 (57.24%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 459
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q+IVE+     +G+   T ED    F   LP  +CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++  GI+ E Q       GLD  KDR+
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COF2_BOVIN (Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.734e-16
Identity = 55/152 (36.18%), Postives = 87/152 (57.24%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 459
            ASG+ V+D+    F ++K          K+  + ++F + + ++Q+IVE+     +G+   T ED    F   LP  +CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++  GI+ E Q       GLD  KDR+
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COF1_MOUSE (Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.734e-16
Identity = 53/137 (38.69%), Postives = 82/137 (59.85%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 414
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P+ A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPENAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: CADF2_PLAFX (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate HB3) PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.734e-16
Identity = 47/125 (37.60%), Postives = 77/125 (61.60%), Query Frame = 1
Query:   61 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPT--QTYEDFAA----SLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQAT 417
            SG+ V D+C  +F +LK K  +++I+++IE  + +VIV+ L +    ++Y+D       +L   ECRY + D    T E   ++RI+FI WSPD A+ + KM+YASSK+   R+++GI   L+ T
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYE-EVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEIT 126          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: CADF2_PLAF7 (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0326 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.734e-16
Identity = 47/125 (37.60%), Postives = 77/125 (61.60%), Query Frame = 1
Query:   61 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPT--QTYEDFAA----SLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQAT 417
            SG+ V D+C  +F +LK K  +++I+++IE  + +VIV+ L +    ++Y+D       +L   ECRY + D    T E   ++RI+FI WSPD A+ + KM+YASSK+   R+++GI   L+ T
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYE-EVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEIT 126          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COF1_SHEEP (Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.265e-16
Identity = 53/137 (38.69%), Postives = 82/137 (59.85%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 414
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P+ A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COF1_PIG (Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.265e-16
Identity = 53/137 (38.69%), Postives = 82/137 (59.85%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 414
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P+ A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of DC900252 vs. ExPASy Swiss-Prot
Match: COF1_MACFA (Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.265e-16
Identity = 53/137 (38.69%), Postives = 82/137 (59.85%), Query Frame = 1
Query:   58 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 414
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P+ A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
The following BLAST results are available for this feature:
BLAST of DC900252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
COF2_PIG1.734e-1636.18Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4[more]
COF2_MOUSE1.734e-1636.18Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1[more]
COF2_HUMAN1.734e-1636.18Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1[more]
COF2_BOVIN1.734e-1636.18Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1[more]
COF1_MOUSE1.734e-1638.69Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3[more]
CADF2_PLAFX1.734e-1637.60Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]
CADF2_PLAF71.734e-1637.60Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]
COF1_SHEEP2.265e-1638.69Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3[more]
COF1_PIG2.265e-1638.69Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3[more]
COF1_MACFA2.265e-1638.69Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionDC900252 VSS Citrus sinensis cDNA clone VS28291 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900252 ID=DC900252; Name=DC900252; organism=Citrus sinensis; type=EST; length=815bp
AAAATTTCTCTGTACTTTGCTTCTTAGATCTTGATCCTAGAAACCATGGC
TAATGCTGCTTCTGGGATGGCTGTACATGATGACTGTAAGCTAAAGTTCT
TGGAGTTGAAAGCCAAGAGAACCTACCGCTTCATAGTATTTAAGATTGAG
GAGAAGCAGAAGCAGGTCATTGTGGAAAAACTTGGTGAGCCAACTCAAAC
CTATGAAGATTTTGCTGCCAGCCTTCCTGCTGAGGAGTGCCGATATGCTG
TGTATGATTATGATTTTGTTACCGCAGAGAACTGCCAAAAAAGCAGGATT
TTCTTCATTGCATGGTCTCCCGACACTGCAAGAGTAAGAAGCAAGATGAT
TTATGCAAGCTCCAAGGACAGGTTCAAGAGAGAGCTAGATGGCATTCAAG
TGGAGCTGCAGGCAACTGATCCATCTGAGATGGGTCTTGACGTATTTAAA
GACCGTGCCAACTAAATAAAGGCTCCTGATCTCAGCAATTGAGATTGTTT
TTATCTTTTGTGCTTTACCTAAAGGTGAAATGTTAATAGTTTGTGGCGGC
AGCTTGAATCTAACTGAATTATGATATTGGTTTGTTGTTCAAGTTTCACC
GATGCAGTATTCTCGTCTAGAACCATTTCAGTGGTCTTTATGATGTCTTT
ATTGATTTGTTGTGGTGTGGAAGTTATGGGATGAGTGGCTACTTATAGCT
ATTTCGTCAAGCTAAGGTGTTTCAATTGATGGGGGATGGATAACCCTCTG
TTAGGGTTGTTTTTACTTTGAAAATGGATGTTTCATTTTGAACTTTATAA
ATGGATGTTTCATTT
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