CX043512

Overview
NameCX043512
Unique NameCX043512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043512 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.619e-12
Identity = 43/115 (37.39%), Postives = 61/115 (53.04%), Query Frame = -1
Query:  303 EASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRNIE-KEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQI 644
            +A A   T  D  E P A+ F  D+PG+             VL +SG+R  E KE++   + R+ER  G F R+F+LPENA +D+I A   +GVL VTV K    +    + IQ+
Sbjct:   38 DAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTVQKLPPPEPKKPKTIQV 152          
BLAST of CX043512 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.029e-11
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = -1
Query:  303 EASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKSD--TWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQI 644
            +A A   T  D KE P ++VF AD+PG+             VL +SG+R   ++D+ D   + R+ER  G F R+F LPENA ++ I A  ++GVL VTV K    +    + +++
Sbjct:   49 DAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVTVEKLPPPEPKKPKTVEV 164          
BLAST of CX043512 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.029e-11
Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = -1
Query:  303 EASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRNI----EKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQI 644
            +A A   T  D K+ P A+ F  D+PGL             +L ISG+R      E++++S  + R+ER  G F R+F LP+NA +D+I A  ++GVLTVTV K    +    + I++
Sbjct:   46 DARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEV 163          
BLAST of CX043512 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = -1
Query:  327 VDWKETPEAHVFKADLPGLXXXXXXXXXXXXXVLQI--------------SGQRNIEKEDKSD--TWHRVERSSGMFSR---RFRLPENAKMDRIKASMENGVLTVTVPKAEEAKK 617
            +DW+ETP AHVF+ DLPGL             +L++              +G+ + E+E+++D   WH  ER++G       +FRLPE+A  D   A M +GVLTVTVPK +  K+
Sbjct:   29 MDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVTVPKRKGKKR 144          
BLAST of CX043512 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.711e-11
Identity = 42/114 (36.84%), Postives = 60/114 (52.63%), Query Frame = -1
Query:  303 EASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVPKAEEAKKANVRAIQI 644
            +A A   T  D KE   A+ F  D+PGL             VL ISG+R  E+ + +  + R+ER  G F R+F LP+NA +D++ A   +GVLTVTV K    +    + I+I
Sbjct:   39 DARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREEREDAK-YLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEI 151          
The following BLAST results are available for this feature:
BLAST of CX043512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS176_ARATH4.619e-1237.3917.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP22_IPONI1.029e-1135.3418.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP18_ORYSJ1.029e-1135.5918.0 kDa class II heat shock protein OS=Oryza sati... [more]
HS178_ORYSJ3.910e-1137.0717.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP23_MAIZE8.711e-1136.8417.0 kDa class II heat shock protein OS=Zea mays G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_11E10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11E10-I19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043512 ID=CX043512; Name=CX043512; organism=Citrus sinensis; type=EST; length=836bp
TTTTTTTTTTTTTTTTTACTGTGAATCTAATAGTCAATTTACTCAAATTG
TGTTACAACTATCAACAATACAAACGAAATCTAAAATCTCAGATGGAAAG
CAGGATTGACAGACAAACAGGCACACGAAGAGACAGCGTTACGAAATTAC
ATTATTATTCCCATTCTGACATTCCCATTACAAACAAAGACACTCGATCT
CAGTAGACAAAGACAGACTTCACATGATACATAGACCAAACCAAACCATA
AAACTTATCATACAATTATTTATTGTCTTTGTTTATTAATTAGTCAGCCA
GAGATTTGAATAGCCCTGACATTAGCTTTCTTGGCCTCCTCCGCTTTAGG
AACGGTAACAGTAAGCACACCGTTCTCCATTGAAGCCTTAATGCGGTCCA
TCTTCGCATTCTCCGGCAGCCTGAACCTCCTCGAGAACATGCCACTGCTA
CGCTCCACGCGATGCCACGTGTCGCTCTTGTCTTCCTTCTCAATGTTCCT
CTGCCCGCTTATCTGAAGCACCCTGTCATCCTCAACCTCGACCTTCACCT
CCTCTTTCCTTAGCCCCGGAAGATCAGCCTTGAACACGTGGGCCTCTGGG
GTTTCCTTCCAGTCCACGCGGGTATTAACGAAAGCAGAGGCTTCTCCAGG
GAACTGAGAGGACACCGCAGATGGAAAAGAAGAAGCAGAGAGAGGGAAGT
CCCTGAATGGATCCCAAACGTCGAGTGAGAACGGATCGAACACACTGCTG
CGTCGGTTGCCGAAGAAGCTTGGAATCAGCGACATTTTCCTTATCTTTCC
TTTTTTTGTTTTCCCTCTCTCTTTCCTCTATCGACT
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