DC900236

Overview
NameDC900236
Unique NameDC900236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900236 vs. ExPASy Swiss-Prot
Match: 2A5B_HUMAN (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform OS=Homo sapiens GN=PPP2R5B PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 5.765e-65
Identity = 131/247 (53.04%), Postives = 161/247 (65.18%), Query Frame = 1
Query:    4 VPNSARANLFIRKLNMCCIIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTSSNSDNKGLDMYDXXXXXXXXXXXXXHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFISETEKHNGIAELLEILGSIINGFALPLKEEHKLFLXRALIPLHKPKCVSMYHHQLSYCITQFXEKD 744
            VP S    L  RKL  C ++FDF D   +LK K++KR  L ELV+ + S      E    +I +M++VN+FRT   S +       +D             HLQ+VYE  LRF+ SP+    +AKRY+D  FVL LL+LFDSED REREYLKTILHR+YGKF+  R +IRK  N+IF RFI E E  NG+AELLEILGSIINGFALPLK EHK FL R LIPLH  K +S++H QL+YC+ QF EKD
Sbjct:   68 VPASELHELLSRKLAQCGVMFDFLDCVADLKGKEVKRAALNELVECVGSTRGVLIEPVYPDIIRMISVNIFRTLPPSENPE-----FDPEEDEPNLEPSWPHLQLVYEFFLRFLESPDFQPSVAKRYVDQKFVLMLLELFDSEDPREREYLKTILHRVYGKFLGLRAYIRKQCNHIFLRFIYEFEHFNGVAELLEILGSIINGFALPLKTEHKQFLVRVLIPLHSVKSLSVFHAQLAYCVVQFLEKD 309          
BLAST of DC900236 vs. ExPASy Swiss-Prot
Match: 2AD1_SCHPO (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta 1 isoform OS=Schizosaccharomyces pombe GN=par1 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.202e-62
Identity = 124/249 (49.80%), Postives = 164/249 (65.86%), Query Frame = 1
Query:    4 VPNSARANLFIRKLNMCCIIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTSSNSDNKGLDMYDXXXXXXXXXXXXXHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFISETEKHNGIAELLEILGSIINGFALPLKEEHKLFLXRALIPLHKPKCVSMYHHQLSYCITQFXEKDFS 750
            VP +   +L + KL  CC++FDFNDP+ +L  K++KR+ L +L+D +S      +E     I  M AVN+FR     +  N   ++ D             HL +VY+  LRF  SP  +  +AK YI+  F+ +LL LFDSED RER++LKT LHRIYGKF+  R FIR++INN+F +F+ E E+ NGIAELLEILGSIINGFALPLKEEHK+FL R LIPLHK K + +Y+ Q++Y I QF EKD S
Sbjct:  113 VPVNKWHSLALEKLEQCCVVFDFNDPSTDLYGKEVKREALQDLIDLISVRKEAIDESLYPSIVHMFAVNVFRPLPPPS--NPPGEIMDLEEDEPALEVAWPHLHLVYDFFLRFFESPSLNTSVAKVYINQKFIRKLLVLFDSEDPRERDFLKTTLHRIYGKFLSLRAFIRRSINNLFLQFVYENEQFNGIAELLEILGSIINGFALPLKEEHKIFLSRVLIPLHKAKSLPLYYPQIAYGIVQFVEKDSS 359          
BLAST of DC900236 vs. ExPASy Swiss-Prot
Match: PSRA_DICDI (Serine/threonine-protein phosphatase 2A regulatory subunit psrA OS=Dictyostelium discoideum GN=psrA PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 7.792e-62
Identity = 121/242 (50.00%), Postives = 163/242 (67.36%), Query Frame = 1
Query:   19 RANLFIRKLNMCCIIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTSSNSDNKGLDMYDXXXXXXXXXXXXXHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFISETEKHNGIAELLEILGSIINGFALPLKEEHKLFLXRALIPLHKPKCVSMYHHQLSYCITQFXEKD 744
            R +LF+ KL  CC ++DF+D    +  K +K++ LL+ V+++S+     +E   + + +MVAVNLFR        N    MYD             H+QVVYE+LLRF+ SP  +  +AK Y+D  FVL++LDLFDSED RER+YLKT LHRIYGKF+  R FIR AI N+F  F+ E+ +HNGI+E+LE+LGSIINGF +PLK+EHK FL + LIPLHKPK  S+Y   L YC++QF EK+
Sbjct:  122 RPSLFLLKLKQCCYVYDFSDNTY-MVSKGVKQEALLQCVNFLSTNDQPLHESIYKMVFEMVAVNLFRPLPPRI--NPYGVMYDPEEDEPILEAAWPHIQVVYEVLLRFIDSPTFNTHIAKNYVDDRFVLQMLDLFDSEDPRERDYLKTTLHRIYGKFLGLRGFIRTAIRNLFCTFVYESHQHNGISEILEVLGSIINGFLVPLKDEHKQFLIKVLIPLHKPKSYSVYCSHLGYCMSQFIEKE 360          
BLAST of DC900236 vs. ExPASy Swiss-Prot
Match: 2AD2_SCHPO (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta 2 isoform OS=Schizosaccharomyces pombe GN=par2 PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.329e-61
Identity = 124/247 (50.20%), Postives = 164/247 (66.40%), Query Frame = 1
Query:    4 VPNSARANLFIRKLNMCCIIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTSSNSDNKGLDMYDXXXXXXXXXXXXXHLQVVYEILLRFVASPETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFISETEKHNGIAELLEILGSIINGFALPLKEEHKLFLXRALIPLHKPKCVSMYHHQLSYCITQFXEKD 744
            V  S R  LFI+KL  C IIFDFNDP+ +L  K+IKR+ LL+++DY+S      +      +    ++N+FR  + + +D    DM+              HL+ VY + ++F+ SP+  A  AK  +D  F  RLL LFD+ED RERE LKT LHRIYGKF+  R +IRK++NN+F +FI E EK +GIAELLEILGSIINGFA+PLKEEHK+FL + LIPLH+ K V +YH QL+YCI QF +KD
Sbjct:  214 VHTSEREELFIKKLEQCNIIFDFNDPSSDLASKEIKREALLQMIDYVSENRGISSASLFPYVVNTFSLNVFRPISPALNDYSS-DMF-ALDDEPFLEPAWPHLEEVYLLFIKFLESPDFRASKAKSLVDRRFFNRLLALFDTEDPRERELLKTTLHRIYGKFLNLRSYIRKSMNNVFLQFIYEREKFHGIAELLEILGSIINGFAVPLKEEHKIFLSKVLIPLHQTKSVFLYHPQLTYCIVQFIDKD 458          
BLAST of DC900236 vs. ExPASy Swiss-Prot
Match: 2A5E_RABIT (Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform (Fragment) OS=Oryctolagus cuniculus GN=PPP2R5E PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17
Identity = 46/116 (39.66%), Postives = 65/116 (56.03%), Query Frame = 1
Query:    4 VPNSARANLFIRKLNMCCIIFDFNDPAKNLKEKDIKRQTLLELVDYMSSVTSKFNEVAMQEITKMVAVNLFRTFTSSNSDNKGLDMYDXXXXXXXXXXXXXHLQVVYEILLRFVAS 351
            VP+S +  LF++KL  CC+IFDF D   +LK K+ KR TL ELVDY++       E    E+ +MV+ N+FRT   S+S+      +D             HLQ+VYE  +RF+ S
Sbjct:   54 VPSSEQPELFLKKLQQCCVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLTEQTYPEVVRMVSCNIFRTLPPSDSNE-----FDPEEDEPTLEASWPHLQLVYEFFIRFLES 164          
The following BLAST results are available for this feature:
BLAST of DC900236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
2A5B_HUMAN5.765e-6553.04Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
2AD1_SCHPO1.202e-6249.80Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
PSRA_DICDI7.792e-6250.00Serine/threonine-protein phosphatase 2A regulatory... [more]
2AD2_SCHPO1.329e-6150.20Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]
2A5E_RABIT7.635e-1739.66Serine/threonine-protein phosphatase 2A 56 kDa reg... [more]

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Properties
Property NameValue
Genbank descriptionDC900236 VSS Citrus sinensis cDNA clone VS28276 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900236 ID=DC900236; Name=DC900236; organism=Citrus sinensis; type=EST; length=804bp
CTCGTGCCGAATTCGGCACGAGCGAATTTGTTCATTAGGAAGTTGAATAT
GTGTTGTATTATTTTCGACTTTAATGATCCAGCAAAGAATCTTAAAGAGA
AGGACATAAAGAGGCAAACTTTGCTTGAGCTTGTTGATTACATGTCGTCT
GTGACCTCAAAATTCAATGAGGTGGCAATGCAAGAGATTACGAAGATGGT
AGCTGTTAATCTGTTTAGAACATTTACATCTTCGAATTCTGATAATAAGG
GTTTGGATATGTATGACCCCGAAGAGGAGGAACCAGCCATGGAGCCAGCA
TGGCCTCATCTTCAGGTTGTGTATGAAATTCTGCTTAGATTTGTGGCTTC
ACCAGAGACTGATGCCAAGCTTGCTAAAAGGTACATTGACCATTCCTTTG
TGTTGAGATTGTTAGATTTGTTTGATTCCGAGGACCAAAGAGAGAGGGAG
TATCTGAAGACTATTCTTCATCGGATTTATGGGAAGTTCATGGTGCACCG
ACCATTTATTAGAAAAGCTATCAACAATATTTTCTATCGATTCATATCTG
AGACAGAAAAGCACAATGGAATAGCTGAATTGCTTGAGATTTTGGGGAGT
ATTATTAATGGATTTGCTCTGCCTTTGAAGGAAGAGCACAAGCTTTTCCT
TGNTCGGGCATTGATTCCCCTGCACAAACCTAAGTGTGTCTCAATGTACC
ACCACCAACTTTCATATTGCATTACTCAGTTTGNGGAGAAAGATTTCAGC
TAGCTGACACTGGCATTAGAGGTCTTTGGAGTATTGGCCCTACTATAGTT
CCAG
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