DC900226

Overview
NameDC900226
Unique NameDC900226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H42_TETPY (Histone H4, minor OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.468e-32
Identity = 68/78 (87.18%), Postives = 74/78 (94.87%), Query Frame = 1
Query:  142 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H41_TETPY (Histone H4, major OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.468e-32
Identity = 68/78 (87.18%), Postives = 74/78 (94.87%), Query Frame = 1
Query:  142 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103          
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H41_BLEJA (Histone H4-1 (Fragment) OS=Blepharisma japonicum PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 5.462e-30
Identity = 65/75 (86.67%), Postives = 73/75 (97.33%), Query Frame = 1
Query:  130 VLRDNIQGITKPAIRRLARRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 351
            V+R+NIQGITKPAIRRLARRGGVKR +SGL+Y+ETR VLK+FLENV+RDAVTYTEHARRKTVTA+DVVYALKRQG
Sbjct:   24 VIRENIQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLENVVRDAVTYTEHARRKTVTALDVVYALKRQG 98          
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_ENTHI (Histone H4 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.133e-30
Identity = 63/78 (80.77%), Postives = 73/78 (93.59%), Query Frame = 1
Query:  136 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 369
            +D ++GITKPAIRRLARRGGVKRI+G +Y+ETR VLK FLE VIRD+VTYTEHA+R+TVTAMDVVYALKRQGRTLYG+
Sbjct:   40 QDALKGITKPAIRRLARRGGVKRINGAVYDETRNVLKQFLEQVIRDSVTYTEHAKRRTVTAMDVVYALKRQGRTLYGY 117          
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_DICDI (Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.030e-28
Identity = 64/78 (82.05%), Postives = 70/78 (89.74%), Query Frame = 1
Query:  136 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 369
            +++I GITKPAIRRLARRGGVKRIS  IYEETR VL+ FL NVIRD+V YTEHA R+TVTAMDVVYALKRQGRTLYGF
Sbjct:   29 KEHINGITKPAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALKRQGRTLYGF 106          
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H42_BLEJA (Histone H4 (Fragment) OS=Blepharisma japonicum GN=H4 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.720e-28
Identity = 61/75 (81.33%), Postives = 72/75 (96.00%), Query Frame = 1
Query:  130 VLRDNIQGITKPAIRRLARRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 351
            V+R+N QGITKPAIRRLARRGGVKR +SGL+Y+ETR VLK+FLE+V+RDAVTYTEHA+R+TVTA+DVVYALKRQG
Sbjct:   15 VIRENNQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLESVVRDAVTYTEHAKRETVTALDVVYALKRQG 89          
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4G_HUMAN (Histone H4-like protein type G OS=Homo sapiens GN=HIST1H4G PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.161e-26
Identity = 63/77 (81.82%), Postives = 65/77 (84.42%), Query Frame = 1
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTL 360
            VL DNIQGITK  IRRLAR GGVKRI GLIYEETR V K+FLENVI  AVT TEHA+RKTVTAM VVY LKRQGRTL
Sbjct:   22 VLSDNIQGITKCTIRRLARHGGVKRILGLIYEETRRVFKVFLENVIWYAVTNTEHAKRKTVTAMAVVYVLKRQGRTL 98          
The following BLAST results are available for this feature:
BLAST of DC900226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H42_TETPY4.468e-3287.18Histone H4, minor OS=Tetrahymena pyriformis PE=1 S... [more]
H41_TETPY4.468e-3287.18Histone H4, major OS=Tetrahymena pyriformis PE=1 S... [more]
H41_BLEJA5.462e-3086.67Histone H4-1 (Fragment) OS=Blepharisma japonicum P... [more]
H4_ENTHI7.133e-3080.77Histone H4 OS=Entamoeba histolytica PE=3 SV=1[more]
H4_DICDI1.030e-2882.05Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1... [more]
H42_BLEJA8.720e-2881.33Histone H4 (Fragment) OS=Blepharisma japonicum GN=... [more]
H4G_HUMAN8.161e-2681.82Histone H4-like protein type G OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC900226 VSS Citrus sinensis cDNA clone VS28265 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900226 ID=DC900226; Name=DC900226; organism=Citrus sinensis; type=EST; length=895bp
GAAAAAAGAAAGAAAAATTCCCAATTAGTTTGAAAACCGTAATTAGCATT
TTAATTTCGTAGCAGAATGTCTGGACGCGGCAAGGGAGGCAAGGGATTGG
GGAAGGGAGGAGCCAAGAGGCATCGCAAGGTGTTGCGTGATAACATTCAG
GGCATCACCAAGCCGGCTATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAA
GAGAATCAGCGGTCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCT
TTTTGGAGAACGTCATTCGCGATGCTGTGACCTACACTGAGCACGCTCGC
CGAAAGACGGTGACCGCCATGGATGTCGTTTATGCGCTCAAGAGGCAGGG
CAGGACTCTCTATGGGTTTGGTGGTTGATGTGGCGTCGTTTTGTATTTTG
TGTTTTAAGGGTTTTCCTTTTTTCCTGTAAATCAGTGAACGTGGTTGTGT
CTAGCGAGTGGGTTTAAATTGGAGGCAACTTGTATTTGCCGTTTCCTAGG
GGTTTTTTATTTTTTTGGTTCATTGGTGTTTTCATCTTTTGCAATGAGTG
GACATCTCTGCTAAAGAGGGTGAAGGTGAAGATTGAAGAAGCAGAGGTGG
GTTTGTTTTCCTATTTTGGAGCAGAGTTGCAATCTTTGTTGTTTTCTGTC
CTCAGTGAACCAGCCAGGAGCTTGGGAGCTCTAGCATATGATAGCAAGGA
AGCTGCAATACCTTTATGACTCCCGGTGTTTTTCTTAGTTTACAAGAGAC
ACTCAAGTACTGTTATTGTGCTGTTCCTATAATGTGGGTGTTATCTTCAC
TGTCAAGAGTTTCATGATTGGACTGCTTGTATCATTTGCATCCCAGAATC
TTTTATATCTGCTGCNGCTGATCAATTTGGACTNAGTGTTAAGAC
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