DC900226

Overview
NameDC900226
Unique NameDC900226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6163 contig Csv1_Contig6163:46..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_DROOR (Histone H4 OS=Drosophila orena GN=His4 PE=3 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 8.406e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_DROME (Histone H4 OS=Drosophila melanogaster GN=His4 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 8.406e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_DROMA (Histone H4 OS=Drosophila mauritiana GN=His4 PE=3 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 8.406e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_DROHY (Histone H4 OS=Drosophila hydei GN=His4 PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 8.406e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_DROER (Histone H4 OS=Drosophila erecta GN=His4 PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 8.406e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_CHITH (Histone H4 OS=Chironomus thummi thummi GN=His4 PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 8.406e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_CHICK (Histone H4 OS=Gallus gallus GN=H4-I PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 8.406e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_CHAVR (Histone H4 OS=Chaetopterus variopedatus PE=3 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 8.406e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_CAIMO (Histone H4 OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 8.406e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_BOVIN (Histone H4 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 8.406e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of DC900226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_DROOR8.406e-3997.56Histone H4 OS=Drosophila orena GN=His4 PE=3 SV=3[more]
H4_DROME8.406e-3997.56Histone H4 OS=Drosophila melanogaster GN=His4 PE=1... [more]
H4_DROMA8.406e-3997.56Histone H4 OS=Drosophila mauritiana GN=His4 PE=3 S... [more]
H4_DROHY8.406e-3997.56Histone H4 OS=Drosophila hydei GN=His4 PE=3 SV=2[more]
H4_DROER8.406e-3997.56Histone H4 OS=Drosophila erecta GN=His4 PE=3 SV=2[more]
H4_CHITH8.406e-3997.56Histone H4 OS=Chironomus thummi thummi GN=His4 PE=... [more]
H4_CHICK8.406e-3997.56Histone H4 OS=Gallus gallus GN=H4-I PE=1 SV=2[more]
H4_CHAVR8.406e-3997.56Histone H4 OS=Chaetopterus variopedatus PE=3 SV=3[more]
H4_CAIMO8.406e-3997.56Histone H4 OS=Cairina moschata PE=3 SV=2[more]
H4_BOVIN8.406e-3997.56Histone H4 OS=Bos taurus PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionDC900226 VSS Citrus sinensis cDNA clone VS28265 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900226 ID=DC900226; Name=DC900226; organism=Citrus sinensis; type=EST; length=895bp
GAAAAAAGAAAGAAAAATTCCCAATTAGTTTGAAAACCGTAATTAGCATT
TTAATTTCGTAGCAGAATGTCTGGACGCGGCAAGGGAGGCAAGGGATTGG
GGAAGGGAGGAGCCAAGAGGCATCGCAAGGTGTTGCGTGATAACATTCAG
GGCATCACCAAGCCGGCTATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAA
GAGAATCAGCGGTCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCT
TTTTGGAGAACGTCATTCGCGATGCTGTGACCTACACTGAGCACGCTCGC
CGAAAGACGGTGACCGCCATGGATGTCGTTTATGCGCTCAAGAGGCAGGG
CAGGACTCTCTATGGGTTTGGTGGTTGATGTGGCGTCGTTTTGTATTTTG
TGTTTTAAGGGTTTTCCTTTTTTCCTGTAAATCAGTGAACGTGGTTGTGT
CTAGCGAGTGGGTTTAAATTGGAGGCAACTTGTATTTGCCGTTTCCTAGG
GGTTTTTTATTTTTTTGGTTCATTGGTGTTTTCATCTTTTGCAATGAGTG
GACATCTCTGCTAAAGAGGGTGAAGGTGAAGATTGAAGAAGCAGAGGTGG
GTTTGTTTTCCTATTTTGGAGCAGAGTTGCAATCTTTGTTGTTTTCTGTC
CTCAGTGAACCAGCCAGGAGCTTGGGAGCTCTAGCATATGATAGCAAGGA
AGCTGCAATACCTTTATGACTCCCGGTGTTTTTCTTAGTTTACAAGAGAC
ACTCAAGTACTGTTATTGTGCTGTTCCTATAATGTGGGTGTTATCTTCAC
TGTCAAGAGTTTCATGATTGGACTGCTTGTATCATTTGCATCCCAGAATC
TTTTATATCTGCTGCNGCTGATCAATTTGGACTNAGTGTTAAGAC
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