DC900226

Overview
NameDC900226
Unique NameDC900226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6163 contig Csv1_Contig6163:46..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_ASEAQ (Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 8.406e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_ACRAS (Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 8.406e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_DENKL (Histone H4 OS=Dendronephthya klunzingeri GN=H4DEKL PE=3 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 1.098e-38
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_ACRFO (Histone H4 OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.098e-38
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H43_MAIZE (Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 1.434e-38
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGV KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVRKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_STYPL (Histone H4 OS=Styela plicata PE=3 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.873e-38
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_PYRSA (Histone H4 OS=Pyrenomonas salina PE=3 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.873e-38
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_OIKDI (Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.873e-38
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTALDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_STRPU (Histone H4 OS=Strongylocentrotus purpuratus PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 4.172e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_PYCHE (Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 4.172e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of DC900226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_ASEAQ8.406e-3997.56Histone H4 OS=Asellus aquaticus GN=His4 PE=3 SV=2[more]
H4_ACRAS8.406e-3997.56Histone H4 OS=Acrolepiopsis assectella GN=His4 PE=... [more]
H4_DENKL1.098e-3896.34Histone H4 OS=Dendronephthya klunzingeri GN=H4DEKL... [more]
H4_ACRFO1.098e-3896.34Histone H4 OS=Acropora formosa PE=3 SV=2[more]
H43_MAIZE1.434e-3898.78Histone H4.3 OS=Zea mays GN=H4 PE=1 SV=3[more]
H4_STYPL1.873e-3896.34Histone H4 OS=Styela plicata PE=3 SV=3[more]
H4_PYRSA1.873e-3897.56Histone H4 OS=Pyrenomonas salina PE=3 SV=3[more]
H4_OIKDI1.873e-3896.34Histone H4 OS=Oikopleura dioica GN=H4.1 PE=3 SV=3[more]
H4_STRPU4.172e-3896.34Histone H4 OS=Strongylocentrotus purpuratus PE=3 S... [more]
H4_PYCHE4.172e-3896.34Histone H4 OS=Pycnopodia helianthoides PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionDC900226 VSS Citrus sinensis cDNA clone VS28265 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900226 ID=DC900226; Name=DC900226; organism=Citrus sinensis; type=EST; length=895bp
GAAAAAAGAAAGAAAAATTCCCAATTAGTTTGAAAACCGTAATTAGCATT
TTAATTTCGTAGCAGAATGTCTGGACGCGGCAAGGGAGGCAAGGGATTGG
GGAAGGGAGGAGCCAAGAGGCATCGCAAGGTGTTGCGTGATAACATTCAG
GGCATCACCAAGCCGGCTATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAA
GAGAATCAGCGGTCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCT
TTTTGGAGAACGTCATTCGCGATGCTGTGACCTACACTGAGCACGCTCGC
CGAAAGACGGTGACCGCCATGGATGTCGTTTATGCGCTCAAGAGGCAGGG
CAGGACTCTCTATGGGTTTGGTGGTTGATGTGGCGTCGTTTTGTATTTTG
TGTTTTAAGGGTTTTCCTTTTTTCCTGTAAATCAGTGAACGTGGTTGTGT
CTAGCGAGTGGGTTTAAATTGGAGGCAACTTGTATTTGCCGTTTCCTAGG
GGTTTTTTATTTTTTTGGTTCATTGGTGTTTTCATCTTTTGCAATGAGTG
GACATCTCTGCTAAAGAGGGTGAAGGTGAAGATTGAAGAAGCAGAGGTGG
GTTTGTTTTCCTATTTTGGAGCAGAGTTGCAATCTTTGTTGTTTTCTGTC
CTCAGTGAACCAGCCAGGAGCTTGGGAGCTCTAGCATATGATAGCAAGGA
AGCTGCAATACCTTTATGACTCCCGGTGTTTTTCTTAGTTTACAAGAGAC
ACTCAAGTACTGTTATTGTGCTGTTCCTATAATGTGGGTGTTATCTTCAC
TGTCAAGAGTTTCATGATTGGACTGCTTGTATCATTTGCATCCCAGAATC
TTTTATATCTGCTGCNGCTGATCAATTTGGACTNAGTGTTAAGAC
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