DC900226

Overview
NameDC900226
Unique NameDC900226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6163 contig Csv1_Contig6163:46..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_PSAMI (Histone H4 OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 4.172e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_PISOC (Histone H4 OS=Pisaster ochraceus PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 4.172e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_PISBR (Histone H4 OS=Pisaster brevispinus PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 4.172e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_PARLI (Histone H4 OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 4.172e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_LYTPI (Histone H4 OS=Lytechinus pictus PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 4.172e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_HOLTU (Histone H4 OS=Holothuria tubulosa PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 4.172e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_CAEEL (Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 4.172e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_APLCA (Histone H4 OS=Aplysia californica GN=His.H4 PE=3 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 7.116e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+ KTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKCKTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H48_CHICK (Histone H4 type VIII OS=Gallus gallus GN=H4-VIII PE=3 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 7.116e-38
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQ RTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQERTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_SOLST (Histone H4 OS=Solaster stimpsoni PE=3 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 9.294e-38
Identity = 78/82 (95.12%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTY EHA+RKTVT+MDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYCEHAKRKTVTSMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of DC900226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_PSAMI4.172e-3896.34Histone H4 OS=Psammechinus miliaris PE=1 SV=2[more]
H4_PISOC4.172e-3896.34Histone H4 OS=Pisaster ochraceus PE=3 SV=2[more]
H4_PISBR4.172e-3896.34Histone H4 OS=Pisaster brevispinus PE=3 SV=2[more]
H4_PARLI4.172e-3896.34Histone H4 OS=Paracentrotus lividus PE=3 SV=2[more]
H4_LYTPI4.172e-3896.34Histone H4 OS=Lytechinus pictus PE=3 SV=2[more]
H4_HOLTU4.172e-3896.34Histone H4 OS=Holothuria tubulosa PE=3 SV=2[more]
H4_CAEEL4.172e-3896.34Histone H4 OS=Caenorhabditis elegans GN=his-1 PE=1... [more]
H4_APLCA7.116e-3896.34Histone H4 OS=Aplysia californica GN=His.H4 PE=3 S... [more]
H48_CHICK7.116e-3896.34Histone H4 type VIII OS=Gallus gallus GN=H4-VIII P... [more]
H4_SOLST9.294e-3895.12Histone H4 OS=Solaster stimpsoni PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionDC900226 VSS Citrus sinensis cDNA clone VS28265 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900226 ID=DC900226; Name=DC900226; organism=Citrus sinensis; type=EST; length=895bp
GAAAAAAGAAAGAAAAATTCCCAATTAGTTTGAAAACCGTAATTAGCATT
TTAATTTCGTAGCAGAATGTCTGGACGCGGCAAGGGAGGCAAGGGATTGG
GGAAGGGAGGAGCCAAGAGGCATCGCAAGGTGTTGCGTGATAACATTCAG
GGCATCACCAAGCCGGCTATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAA
GAGAATCAGCGGTCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCT
TTTTGGAGAACGTCATTCGCGATGCTGTGACCTACACTGAGCACGCTCGC
CGAAAGACGGTGACCGCCATGGATGTCGTTTATGCGCTCAAGAGGCAGGG
CAGGACTCTCTATGGGTTTGGTGGTTGATGTGGCGTCGTTTTGTATTTTG
TGTTTTAAGGGTTTTCCTTTTTTCCTGTAAATCAGTGAACGTGGTTGTGT
CTAGCGAGTGGGTTTAAATTGGAGGCAACTTGTATTTGCCGTTTCCTAGG
GGTTTTTTATTTTTTTGGTTCATTGGTGTTTTCATCTTTTGCAATGAGTG
GACATCTCTGCTAAAGAGGGTGAAGGTGAAGATTGAAGAAGCAGAGGTGG
GTTTGTTTTCCTATTTTGGAGCAGAGTTGCAATCTTTGTTGTTTTCTGTC
CTCAGTGAACCAGCCAGGAGCTTGGGAGCTCTAGCATATGATAGCAAGGA
AGCTGCAATACCTTTATGACTCCCGGTGTTTTTCTTAGTTTACAAGAGAC
ACTCAAGTACTGTTATTGTGCTGTTCCTATAATGTGGGTGTTATCTTCAC
TGTCAAGAGTTTCATGATTGGACTGCTTGTATCATTTGCATCCCAGAATC
TTTTATATCTGCTGCNGCTGATCAATTTGGACTNAGTGTTAAGAC
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