DC900226

Overview
NameDC900226
Unique NameDC900226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6163 contig Csv1_Contig6163:46..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_APIME (Histone H4 OS=Apis mellifera PE=3 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 1.342e-36
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VL DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEH +RKTVTAMDVVYALK QGRTLYGFGG
Sbjct:   22 VLGDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHTKRKTVTAMDVVYALKIQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_TRICD (Histone H4 OS=Trichogramma cacoeciae PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.753e-36
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            VLRDNIQGITKPAIRRLARRGGVKRIS LIYEETRGVLK+FLENVIRDAVTYTEHA+  TVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISSLIYEETRGVLKVFLENVIRDAVTYTEHAKIPTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_USTMA (Histone H4 OS=Ustilago maydis GN=HHF1 PE=3 SV=4)

HSP 1 Score: 151.369 bits (381), Expect = 6.661e-36
Identity = 73/81 (90.12%), Postives = 81/81 (100.00%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 372
            +LRDNIQGITKPAIRRLARRGGVKRISGLIY+ETRGVLK+FLE+VIRD+VTYTEHA+RKTVT++DVVYALKRQGRTLYGFG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYDETRGVLKLFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 102
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_NEUCR (Histone H4 OS=Neurospora crassa GN=hhf-1 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 6.661e-36
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_ASPOR (Histone H4 OS=Aspergillus oryzae GN=hhfA PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 6.661e-36
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H4_ASPFU (Histone H4 OS=Aspergillus fumigatus GN=hhfA PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 6.661e-36
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H42_PENFN (Histone H4.2 OS=Penicillium funiculosum GN=H4.2 PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 6.661e-36
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H42_EMENI (Histone H4.2 OS=Emericella nidulans GN=hhfB PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 6.661e-36
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H41_PENFN (Histone H4.1 OS=Penicillium funiculosum GN=H4.1 PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 6.661e-36
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of DC900226 vs. ExPASy Swiss-Prot
Match: H41_EMENI (Histone H4.1 OS=Emericella nidulans GN=hhfA PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 6.661e-36
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:  130 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 375
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of DC900226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_APIME1.342e-3693.90Histone H4 OS=Apis mellifera PE=3 SV=3[more]
H4_TRICD1.753e-3693.90Histone H4 OS=Trichogramma cacoeciae PE=3 SV=3[more]
H4_USTMA6.661e-3690.12Histone H4 OS=Ustilago maydis GN=HHF1 PE=3 SV=4[more]
H4_NEUCR6.661e-3690.24Histone H4 OS=Neurospora crassa GN=hhf-1 PE=3 SV=2[more]
H4_ASPOR6.661e-3690.24Histone H4 OS=Aspergillus oryzae GN=hhfA PE=3 SV=3[more]
H4_ASPFU6.661e-3690.24Histone H4 OS=Aspergillus fumigatus GN=hhfA PE=3 S... [more]
H42_PENFN6.661e-3690.24Histone H4.2 OS=Penicillium funiculosum GN=H4.2 PE... [more]
H42_EMENI6.661e-3690.24Histone H4.2 OS=Emericella nidulans GN=hhfB PE=3 S... [more]
H41_PENFN6.661e-3690.24Histone H4.1 OS=Penicillium funiculosum GN=H4.1 PE... [more]
H41_EMENI6.661e-3690.24Histone H4.1 OS=Emericella nidulans GN=hhfA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionDC900226 VSS Citrus sinensis cDNA clone VS28265 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900226 ID=DC900226; Name=DC900226; organism=Citrus sinensis; type=EST; length=895bp
GAAAAAAGAAAGAAAAATTCCCAATTAGTTTGAAAACCGTAATTAGCATT
TTAATTTCGTAGCAGAATGTCTGGACGCGGCAAGGGAGGCAAGGGATTGG
GGAAGGGAGGAGCCAAGAGGCATCGCAAGGTGTTGCGTGATAACATTCAG
GGCATCACCAAGCCGGCTATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAA
GAGAATCAGCGGTCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCT
TTTTGGAGAACGTCATTCGCGATGCTGTGACCTACACTGAGCACGCTCGC
CGAAAGACGGTGACCGCCATGGATGTCGTTTATGCGCTCAAGAGGCAGGG
CAGGACTCTCTATGGGTTTGGTGGTTGATGTGGCGTCGTTTTGTATTTTG
TGTTTTAAGGGTTTTCCTTTTTTCCTGTAAATCAGTGAACGTGGTTGTGT
CTAGCGAGTGGGTTTAAATTGGAGGCAACTTGTATTTGCCGTTTCCTAGG
GGTTTTTTATTTTTTTGGTTCATTGGTGTTTTCATCTTTTGCAATGAGTG
GACATCTCTGCTAAAGAGGGTGAAGGTGAAGATTGAAGAAGCAGAGGTGG
GTTTGTTTTCCTATTTTGGAGCAGAGTTGCAATCTTTGTTGTTTTCTGTC
CTCAGTGAACCAGCCAGGAGCTTGGGAGCTCTAGCATATGATAGCAAGGA
AGCTGCAATACCTTTATGACTCCCGGTGTTTTTCTTAGTTTACAAGAGAC
ACTCAAGTACTGTTATTGTGCTGTTCCTATAATGTGGGTGTTATCTTCAC
TGTCAAGAGTTTCATGATTGGACTGCTTGTATCATTTGCATCCCAGAATC
TTTTATATCTGCTGCNGCTGATCAATTTGGACTNAGTGTTAAGAC
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