DC900225

Overview
NameDC900225
Unique NameDC900225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.168e-46
Identity = 85/115 (73.91%), Postives = 100/115 (86.96%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            FA LY FKWT+LLIPPTT+LI+N++G+VAGVS AIN+G ++WGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV++WS+LLASIFSLLWVR+DPFT    +     QCGINC
Sbjct:  942 FAELYAFKWTTLLIPPTTLLILNIIGVVAGVSDAINNGSEAWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFTI-KARGPDVRQCGINC 1055          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.829e-46
Identity = 87/119 (73.11%), Postives = 102/119 (85.71%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNG----QCGINC 491
            F+ LY FKWT+LLIPPTT+L++N +G+VAGVS AIN+GY+SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVR+DPF      A +NG    +CG++C
Sbjct:  978 FSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFL-----AKNNGPLLEECGLDC 1091          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.835e-45
Identity = 86/119 (72.27%), Postives = 102/119 (85.71%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNG----QCGINC 491
            F+ LY FKWT+LLIPPTT+L++N +G+VAGVS AIN+GY+SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVR+DPF      A ++G    +CG++C
Sbjct:  978 FSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFL-----AKNDGPLLEECGLDC 1091          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.835e-45
Identity = 86/119 (72.27%), Postives = 102/119 (85.71%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNG----QCGINC 491
            F+ LY FKWT+LLIPPTT+L++N +G+VAGVS AIN+GY+SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVR+DPF      A ++G    +CG++C
Sbjct:  978 FSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFL-----AKNDGPLLEECGLDC 1091          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.835e-45
Identity = 86/119 (72.27%), Postives = 102/119 (85.71%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNG----QCGINC 491
            F+ LY FKWT+LLIPPTT+L++N +G+VAGVS AIN+GY+SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIVIVWSILLASIFSLLWVR+DPF      A ++G    +CG++C
Sbjct:  979 FSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFL-----AKNDGPLLEECGLDC 1092          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.397e-45
Identity = 84/115 (73.04%), Postives = 99/115 (86.09%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            F  LY+FKWT+LLIPPTT++I+N+VG+VAGVS AIN+GY SWGPLFGKLFFA WVI HLYPFLKGL+GRQNRTPTIV++WSILLASIFSL+WVR+DPF    T      QCG++C
Sbjct:  936 FGDLYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPLLK-QCGVDC 1049          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.029e-44
Identity = 77/115 (66.96%), Postives = 97/115 (84.35%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            F  LYVFKWT++LIPPT++L++NLVG+VAG S A+NSGY+SWGPLFGK+FFA+WVI HLYPFLKGL+GRQNRTPTIV++WS+LLAS+FSLLWV++DPF        +N     +C
Sbjct:  875 FGELYVFKWTTVLIPPTSILVLNLVGVVAGFSDALNSGYESWGPLFGKVFFAMWVIMHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLLWVKIDPFIGSSETTTTNSCANFDC 989          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 2.029e-44
Identity = 77/115 (66.96%), Postives = 97/115 (84.35%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            F  LYVFKWT++LIPPT++L++NLVG+VAG S A+NSGY+SWGPLFGK+FFA+WVI HLYPFLKGL+GRQNRTPTIV++WS+LLAS+FSLLWV++DPF        +N     +C
Sbjct:  875 FGELYVFKWTTVLIPPTSILVLNLVGVVAGFSDALNSGYESWGPLFGKVFFAMWVIMHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLLWVKIDPFIGSSETTTTNSCANFDC 989          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.520e-44
Identity = 81/115 (70.43%), Postives = 98/115 (85.22%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            F  LY+FKWT+LL+PPTT++I+N+VGIVAGVS A+N+GY SWGPLFGKLFF+ WVI HLYPFLKGL+GRQNRTPTIV++WSILLASIFSL+WVR+DPF     K      CG++C
Sbjct:  950 FGELYLFKWTTLLVPPTTLIIINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVILHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFI-PKPKGPVLKPCGVSC 1063          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.315e-43
Identity = 80/115 (69.57%), Postives = 98/115 (85.22%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            F+ LY+FKWTSLLIPPTT+LI+N+VG++ GVS AIN+GY SWGPLFG+LFFA+WVI HLYPFLKGLLG+Q+R PTI++VWSILLASI +LLWVRV+PF S D        CG++C
Sbjct:  974 FSELYIFKWTSLLIPPTTLLIINIVGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRVPTIILVWSILLASILTLLWVRVNPFVSKDGPVLE--ICGLDC 1086          
The following BLAST results are available for this feature:
BLAST of DC900225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CESA9_ORYSI2.168e-4673.91Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA6_ORYSJ4.829e-4673.11Probable cellulose synthase A catalytic subunit 6 ... [more]
CESA5_ORYSJ1.835e-4572.27Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI1.835e-4572.27Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA3_ORYSJ1.835e-4572.27Probable cellulose synthase A catalytic subunit 3 ... [more]
CESA4_ARATH2.397e-4573.04Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSJ2.029e-4466.96Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSI2.029e-4466.96Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA7_ORYSJ4.520e-4470.43Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA9_ARATH1.315e-4369.57Probable cellulose synthase A catalytic subunit 9 ... [more]

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Properties
Property NameValue
Genbank descriptionDC900225 VSS Citrus sinensis cDNA clone VS28263 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900225 ID=DC900225; Name=DC900225; organism=Citrus sinensis; type=EST; length=830bp
CGGAATAATGATGGGTGTATTAGACGGNGAGAATAACAGTTTGGTCATGG
TGAACACGGCCCATCTATTGCTGTTTCCAAGTCTCTNAAAGGCCTGCTGG
ATTANACCAACTTACTGCACTTCAAAGGCTCTGATGATGATGNAGATTTG
CANAGCTTTATGTATTCAAATGGACATCTCTTCTCATCCCTCCAACTACA
GTCCTGATTGTGAACTTGGTGGGTATTGTAGCTGGTGTATCATGGGCCAT
AAACAGTGGTTACCAATCATGGGGTCCACTCTTTGGCAAGCTATTCTTTG
CCATATGGGTCATTGCCCATCTGTATCCTTTCCTGAAGGGTCTGTTGGGT
CGTCAAAACCGCACACCAACAATTGTCATTGTGTGGTCTATCCTACTTGC
TTCCATTTTCTCCTTGCTGTGGGTGCGTGTTGATCCCTTTACCTCTGATG
ACACCAAAGCCAATTCAAACGGTCAATGTGGCATCAATTGCTAGTGCATG
TTGGATGATTATTTGTGGCTTCAAATGCCATTCTTCCTTCAAGCTCTCAT
CAGTGTATATAAGAAGAAATTATGTCATTGGGAAATGATCGTAAGTTAAT
TTACTTCTCGTCGGTCTGGAGAAAGGAGTTTGATGATATGGGATCTTTTC
ATTTGTCGTGGAGCCTACTAAGGAGNANNTGAGGCTTTAGTAAAACCCTT
TTTGTATCTTATTTAATATTTATTCTTATATCGTTTTGTAACTTCCATAC
AGATGCTTGATGTTGGTCCCTACTTGTTTAGTTGTGTTGGACCTAAGTTG
TGAAGCTCCATTTTCTCAAGTTCAGAGCGC
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