DC900225

Overview
NameDC900225
Unique NameDC900225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.231e-42
Identity = 80/116 (68.97%), Postives = 98/116 (84.48%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTS-DDTKANSNGQCGINC 491
            F  LY+ KWT+LLIPPT++LI+NLVG+VAG S A+N GY++WGPLFGK+FFA WVI HLYPFLKGL+GRQNRTPTIVI+WSILLAS+FSL+WVR++PF S  DT + S     I+C
Sbjct:  870 FGELYIVKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILWSILLASVFSLVWVRINPFVSKTDTTSLSLNCLLIDC 985          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.100e-41
Identity = 74/115 (64.35%), Postives = 97/115 (84.35%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            F+ LY+FKWT+LLIPPTT+LI+N++G++ GVS AI++GY SWGPLFG+LFFA+WVI HLYPFLKG+LG+Q++ PTI++VWSILLASI +LLWVRV+PF +          CG+NC
Sbjct:  970 FSELYIFKWTTLLIPPTTLLIINIIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQDKMPTIIVVWSILLASILTLLWVRVNPFVAKGGPVLE--ICGLNC 1082          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.109e-41
Identity = 75/115 (65.22%), Postives = 96/115 (83.48%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            F+ LY+FKWTSLLIPPTT+LI+N++G++ G+S AI++GY SWGPLFG+LFFA WVI HLYPFLKGLLG+Q+R PTI++VWSILLASI +LLWVRV+PF +          CG++C
Sbjct:  956 FSELYIFKWTSLLIPPTTLLIINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVAKGGPILE--ICGLDC 1068          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.778e-40
Identity = 75/115 (65.22%), Postives = 96/115 (83.48%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCGINC 491
            F+ LY+FKWTSLLIPP T+LI+N++G++ GVS AI++GY SWGPLFG+LFFA+WVI HLYPFLKGLLG+Q+R PTI++VWSILLASI +LLWVRV+PF +          CG++C
Sbjct:  971 FSDLYLFKWTSLLIPPMTLLIINVIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVWSILLASILTLLWVRVNPFVAKGGPILE--ICGLDC 1083          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.321e-27
Identity = 56/97 (57.73%), Postives = 70/97 (72.16%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 437
            FA LY+ KWTSL+IPP T+++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLWV ++P
Sbjct: 1035 FADLYIVKWTSLMIPPITIMMVNLIAIAVGFSRTIYSVIPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINP 1131          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.321e-27
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 437
            FA LY+ KWTSL+IPP  +++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS LLA   SLLWV ++P
Sbjct: 1060 FADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINP 1156          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.321e-27
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 437
            FA LY+ KWTSL+IPP  +++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS LLA   SLLWV ++P
Sbjct: 1060 FADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINP 1156          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.726e-27
Identity = 59/112 (52.68%), Postives = 73/112 (65.18%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 482
            FA LY  KWTSL+IPP T++++NLV I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLW+ + P       A +N Q G
Sbjct: 1015 FAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP-----PSAQANSQLG 1121          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.726e-27
Identity = 59/112 (52.68%), Postives = 73/112 (65.18%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 482
            FA LY  KWTSL+IPP T++++NLV I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLW+ + P       A +N Q G
Sbjct: 1015 FAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKP-----PSAQANSQLG 1121          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.254e-27
Identity = 56/97 (57.73%), Postives = 70/97 (72.16%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 437
            FA LY+ KWTSL+IPP T+++VNL+ I  G S  I S    W  L G +FF+ WV+AHLYPF KGL+GR+ RTPTIV VWS L+A   SLLWV ++P
Sbjct: 1035 FADLYMVKWTSLMIPPITIIMVNLIAIAVGFSRTIYSVVPQWSKLIGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINP 1131          
The following BLAST results are available for this feature:
BLAST of DC900225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CESA8_ARATH4.231e-4268.97Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CESA2_ARATH2.100e-4164.35Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESA5_ARATH6.109e-4165.22Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CESA6_ARATH1.778e-4065.22Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CSLD3_ARATH1.321e-2757.73Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CSLD2_ORYSJ1.321e-2757.73Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI1.321e-2757.73Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD1_ORYSJ1.726e-2752.68Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI1.726e-2752.68Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD2_ARATH2.254e-2757.73Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionDC900225 VSS Citrus sinensis cDNA clone VS28263 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900225 ID=DC900225; Name=DC900225; organism=Citrus sinensis; type=EST; length=830bp
CGGAATAATGATGGGTGTATTAGACGGNGAGAATAACAGTTTGGTCATGG
TGAACACGGCCCATCTATTGCTGTTTCCAAGTCTCTNAAAGGCCTGCTGG
ATTANACCAACTTACTGCACTTCAAAGGCTCTGATGATGATGNAGATTTG
CANAGCTTTATGTATTCAAATGGACATCTCTTCTCATCCCTCCAACTACA
GTCCTGATTGTGAACTTGGTGGGTATTGTAGCTGGTGTATCATGGGCCAT
AAACAGTGGTTACCAATCATGGGGTCCACTCTTTGGCAAGCTATTCTTTG
CCATATGGGTCATTGCCCATCTGTATCCTTTCCTGAAGGGTCTGTTGGGT
CGTCAAAACCGCACACCAACAATTGTCATTGTGTGGTCTATCCTACTTGC
TTCCATTTTCTCCTTGCTGTGGGTGCGTGTTGATCCCTTTACCTCTGATG
ACACCAAAGCCAATTCAAACGGTCAATGTGGCATCAATTGCTAGTGCATG
TTGGATGATTATTTGTGGCTTCAAATGCCATTCTTCCTTCAAGCTCTCAT
CAGTGTATATAAGAAGAAATTATGTCATTGGGAAATGATCGTAAGTTAAT
TTACTTCTCGTCGGTCTGGAGAAAGGAGTTTGATGATATGGGATCTTTTC
ATTTGTCGTGGAGCCTACTAAGGAGNANNTGAGGCTTTAGTAAAACCCTT
TTTGTATCTTATTTAATATTTATTCTTATATCGTTTTGTAACTTCCATAC
AGATGCTTGATGTTGGTCCCTACTTGTTTAGTTGTGTTGGACCTAAGTTG
TGAAGCTCCATTTTCTCAAGTTCAGAGCGC
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