DC900225

Overview
NameDC900225
Unique NameDC900225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.469e-26
Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 437
            FA LYV KW+ L++PP T+++VN++ I  G++  + S +  W  L G +FF+ WV+ HLYPF KGL+GR+ R PTIV VWS LL+ I SLLWV ++P
Sbjct: 1072 FADLYVVKWSFLMVPPLTIMMVNMIAIAVGLARTLYSPFPQWSKLVGGVFFSFWVLCHLYPFAKGLMGRRGRVPTIVFVWSGLLSIIVSLLWVYINP 1168          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.615e-25
Identity = 52/97 (53.61%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 437
            FA LY+ KWT L I P T++IVNLV IV G S  I S    WG L G +FF++WV+ H+YPF KGL+GR+ + PTIV VWS L++   SLLW+ + P
Sbjct:  928 FADLYIVKWTGLFIMPLTIIIVNLVAIVIGASRTIYSVIPQWGKLMGGIFFSLWVLTHMYPFAKGLMGRRGKVPTIVYVWSGLVSITVSLLWITISP 1024          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.978e-24
Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNGQCG 482
            +A LY+ KW+SL+IPP  + +VN++ IV      I      W  L G  FF+ WV+AHLYPF KGL+GR+ +TPTIV VW+ L+A   SLLW  ++P T     A   G  G
Sbjct:  996 YADLYIVKWSSLMIPPIVIAMVNIIAIVVAFIRTIYQAVPQWSKLIGGAFFSFWVLAHLYPFAKGLMGRRGKTPTIVFVWAGLIAITISLLWTAINPNTGPAAAAEGVGGGG 1107          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.978e-24
Identity = 55/109 (50.46%), Postives = 71/109 (65.14%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKANSNG 473
            +A LY+ KW+SLLIPP T+ +VN++ I    +  I S    WG   G  FF+ WV+AHL PF KGL+GR+ +TPTIV VWS LL+   SLLWV + P      +ANSNG
Sbjct: 1034 YADLYIVKWSSLLIPPITIGMVNIIAIAFAFARTIYSDNPRWGKFIGGGFFSFWVLAHLNPFAKGLMGRRGKTPTIVFVWSGLLSITVSLLWVAISP-----PEANSNG 1137          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.786e-24
Identity = 48/97 (49.48%), Postives = 65/97 (67.01%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDP 437
            FA LY  +W+ L++PP T+++VN V I    +  + S +  W  L G  FF+ WV+ HLYPF KGLLGR+ R PTIV VWS L++ I SLLWV ++P
Sbjct: 1103 FAELYEVRWSYLMVPPVTIMMVNAVAIAVAAARTLYSEFPQWSKLLGGAFFSFWVLCHLYPFAKGLLGRRGRVPTIVFVWSGLISMIISLLWVYINP 1199          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.579e-23
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKA 461
            FA LY+ KWTSL IPP  V+ +N++ +V GVS  + +    +  L G  FF+ WV+AH YPF KGL+GR+ RTPTIV VW+ L++   SLLW+ + P   DD+ A
Sbjct:  904 FAELYLIKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLAHYYPFAKGLMGRRGRTPTIVYVWAGLISITVSLLWITISP--PDDSVA 1006          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.579e-23
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRVDPFTSDDTKA 461
            FA LY+ KWTSL IPP  V+ +N++ +V GVS  + +    +  L G  FF+ WV+AH YPF KGL+GR+ RTPTIV VW+ L++   SLLW+ + P   DD+ A
Sbjct:  904 FAELYLIKWTSLFIPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLAHYYPFAKGLMGRRGRTPTIVYVWAGLISITVSLLWITISP--PDDSVA 1006          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.399e-23
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRV 431
            FA LY+FKWT+L+IPP T++I+N+V I+  V   + S    W  L G  FFA WV+ H+YPF KGL+GR  +TPT+V VWS L+A   SLL++ +
Sbjct:  872 FADLYLFKWTALMIPPLTIIILNIVAILFAVCRTVFSANPQWSNLLGGTFFASWVLLHMYPFAKGLMGRGGKTPTVVYVWSGLIAICLSLLYITI 966          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.043e-20
Identity = 46/95 (48.42%), Postives = 68/95 (71.58%), Query Frame = 3
Query:  168 KWTSLLIPPTTVLIVNLVGIVAGVSWAINSGY-QSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRT-PTIVIVWSILLASIFSLLWVRVDPFTS 446
            +WT+LL+ PT+V++ NL G+VA V++ ++ GY QSWG L  KL  A WV+AHL  FL+GLL  ++R  PTI ++WS++  S+ SLLWV    F++
Sbjct:  754 RWTNLLVAPTSVVVANLAGVVAAVAYGVDHGYYQSWGALGAKLALAGWVVAHLQGFLRGLLAPRDRAPPTIAVLWSVVFVSVASLLWVHAASFSA 848          
BLAST of DC900225 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.208e-16
Identity = 34/95 (35.79%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  147 FAXLYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRV 431
            +A LYV +WT L+I P  +++VN++G     +  ++  +  W  + G +FF  WV+ HLYPF KG+LG+  +TP +V+VW      I ++L++ +
Sbjct:  824 YADLYVVRWTWLMITPIIIILVNIIGSAVAFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGKTPVVVLVWWAFTFVITAVLYINI 918          
The following BLAST results are available for this feature:
BLAST of DC900225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CSLD5_ARATH9.469e-2651.55Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLD1_ARATH1.615e-2553.61Cellulose synthase-like protein D1 OS=Arabidopsis ... [more]
CSLD4_ARATH3.978e-2445.54Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLD3_ORYSJ3.978e-2450.46Cellulose synthase-like protein D3 OS=Oryza sativa... [more]
CSLD4_ORYSJ6.786e-2449.48Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLD5_ORYSJ2.579e-2348.57Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI2.579e-2348.57Putative cellulose synthase-like protein D5 OS=Ory... [more]
CSLD6_ARATH4.399e-2350.53Putative cellulose synthase-like protein D6 OS=Ara... [more]
CESAB_ORYSJ2.043e-2048.42Putative cellulose synthase A catalytic subunit 11... [more]
CSLF6_ORYSJ5.208e-1635.79Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionDC900225 VSS Citrus sinensis cDNA clone VS28263 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900225 ID=DC900225; Name=DC900225; organism=Citrus sinensis; type=EST; length=830bp
CGGAATAATGATGGGTGTATTAGACGGNGAGAATAACAGTTTGGTCATGG
TGAACACGGCCCATCTATTGCTGTTTCCAAGTCTCTNAAAGGCCTGCTGG
ATTANACCAACTTACTGCACTTCAAAGGCTCTGATGATGATGNAGATTTG
CANAGCTTTATGTATTCAAATGGACATCTCTTCTCATCCCTCCAACTACA
GTCCTGATTGTGAACTTGGTGGGTATTGTAGCTGGTGTATCATGGGCCAT
AAACAGTGGTTACCAATCATGGGGTCCACTCTTTGGCAAGCTATTCTTTG
CCATATGGGTCATTGCCCATCTGTATCCTTTCCTGAAGGGTCTGTTGGGT
CGTCAAAACCGCACACCAACAATTGTCATTGTGTGGTCTATCCTACTTGC
TTCCATTTTCTCCTTGCTGTGGGTGCGTGTTGATCCCTTTACCTCTGATG
ACACCAAAGCCAATTCAAACGGTCAATGTGGCATCAATTGCTAGTGCATG
TTGGATGATTATTTGTGGCTTCAAATGCCATTCTTCCTTCAAGCTCTCAT
CAGTGTATATAAGAAGAAATTATGTCATTGGGAAATGATCGTAAGTTAAT
TTACTTCTCGTCGGTCTGGAGAAAGGAGTTTGATGATATGGGATCTTTTC
ATTTGTCGTGGAGCCTACTAAGGAGNANNTGAGGCTTTAGTAAAACCCTT
TTTGTATCTTATTTAATATTTATTCTTATATCGTTTTGTAACTTCCATAC
AGATGCTTGATGTTGGTCCCTACTTGTTTAGTTGTGTTGGACCTAAGTTG
TGAAGCTCCATTTTCTCAAGTTCAGAGCGC
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